RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 SLC36A4Q6YBV0 504 aa17.57■□□□□ 0.4
CLN3-217ENST00000565354 TMPRSS6Q8IU80 811 aa17.57■□□□□ 0.4
CLN3-217ENST00000565354 CCDC50Q8IVM0 306 aa17.57■□□□□ 0.4
CLN3-217ENST00000565354 FAM71BQ8TC56 605 aa17.57■□□□□ 0.4
CLN3-217ENST00000565354 RAPGEF5Q92565 580 aa17.57■□□□□ 0.4
CLN3-217ENST00000565354 TSC1Q92574 1164 aa17.57■□□□□ 0.4
CLN3-217ENST00000565354 RNF25Q96BH1 459 aaPredicted RBP17.57■□□□□ 0.4
CLN3-217ENST00000565354 SIPA1Q96FS4 1042 aa17.57■□□□□ 0.4
CLN3-217ENST00000565354 SLC39A8Q9C0K1 460 aa17.57■□□□□ 0.4
CLN3-217ENST00000565354 NOL6Q9H6R4 1146 aaKnown RBP17.57■□□□□ 0.4
CLN3-217ENST00000565354 LRRC19Q9H756 370 aa17.57■□□□□ 0.4
CLN3-217ENST00000565354 SP110Q9HB58 689 aa17.57■□□□□ 0.4
CLN3-217ENST00000565354 PRSS16Q9NQE7 514 aa17.57■□□□□ 0.4
CLN3-217ENST00000565354 DNAAF2Q9NVR5 837 aaKnown RBP17.57■□□□□ 0.4
CLN3-217ENST00000565354 AMFRQ9UKV5 643 aa17.57■□□□□ 0.4
CLN3-217ENST00000565354 A0A0U1RQJ8 604 aa17.56■□□□□ 0.4
CLN3-217ENST00000565354 PALMO75781 387 aa17.56■□□□□ 0.4
CLN3-217ENST00000565354 ZMPSTE24O75844 475 aa17.56■□□□□ 0.4
CLN3-217ENST00000565354 MT-CO1P00395 513 aa17.56■□□□□ 0.4
CLN3-217ENST00000565354 DNTTP04053 509 aa17.56■□□□□ 0.4
CLN3-217ENST00000565354 PAPOLAP51003 745 aaKnown RBP17.56■□□□□ 0.4
CLN3-217ENST00000565354 DNA2P51530 1060 aa17.56■□□□□ 0.4
CLN3-217ENST00000565354 SERINC3Q13530 473 aa17.56■□□□□ 0.4
CLN3-217ENST00000565354 ZNF776Q68DI1 518 aaPredicted RBP17.56■□□□□ 0.4
CLN3-217ENST00000565354 LEKR1Q6ZMV7 388 aa17.56■□□□□ 0.4
CLN3-217ENST00000565354 METTL3Q86U44 580 aaKnown RBP17.56■□□□□ 0.4
CLN3-217ENST00000565354 PDZD3Q86UT5 571 aa17.56■□□□□ 0.4
CLN3-217ENST00000565354 RFX6Q8HWS3 928 aa17.56■□□□□ 0.4
CLN3-217ENST00000565354 DEFB119Q8N690 84 aa17.56■□□□□ 0.4
CLN3-217ENST00000565354 OR2I1PQ8NGU4 316 aa17.56■□□□□ 0.4
CLN3-217ENST00000565354 OR8D1Q8WZ84 308 aa17.56■□□□□ 0.4
CLN3-217ENST00000565354 SLC6A17Q9H1V8 727 aa17.56■□□□□ 0.4
CLN3-217ENST00000565354 ETNK2Q9NVF9 386 aa17.56■□□□□ 0.4
CLN3-217ENST00000565354 PTPRBP23467 1997 aa17.55■□□□□ 0.4
CLN3-217ENST00000565354 GRID2IPA4D2P6 1211 aa17.55■□□□□ 0.4
CLN3-217ENST00000565354 K7ERQ8 282 aa17.55■□□□□ 0.4
CLN3-217ENST00000565354 ZNF217O75362 1048 aa17.55■□□□□ 0.4
CLN3-217ENST00000565354 SYPP08247 313 aa17.55■□□□□ 0.4
CLN3-217ENST00000565354 ZNF33AQ06730 810 aa17.55■□□□□ 0.4
CLN3-217ENST00000565354 TRIP6Q15654 476 aaKnown RBP17.55■□□□□ 0.4
CLN3-217ENST00000565354 C9orf64Q5T6V5 341 aa17.55■□□□□ 0.4
CLN3-217ENST00000565354 C22orf39Q6P5X5 142 aa17.55■□□□□ 0.4
CLN3-217ENST00000565354 Q6ZVU0 165 aa17.55■□□□□ 0.4
CLN3-217ENST00000565354 PEX26Q7Z412 305 aa17.55■□□□□ 0.4
CLN3-217ENST00000565354 DSG4Q86SJ6 1040 aa17.55■□□□□ 0.4
CLN3-217ENST00000565354 STK40Q8N2I9 435 aa17.55■□□□□ 0.4
CLN3-217ENST00000565354 RYBPQ8N488 228 aaPredicted RBP17.55■□□□□ 0.4
CLN3-217ENST00000565354 RNF10Q8N5U6 811 aaKnown RBP17.55■□□□□ 0.4
CLN3-217ENST00000565354 NPWQ8N729 165 aa17.55■□□□□ 0.4
CLN3-217ENST00000565354 NETO2Q8NC67 525 aa17.55■□□□□ 0.4
CLN3-217ENST00000565354 PTPRN2Q92932 1015 aa17.55■□□□□ 0.4
CLN3-217ENST00000565354 RBM41Q96IZ5 413 aaKnown RBP17.55■□□□□ 0.4
CLN3-217ENST00000565354 PDLIM2Q96JY6 352 aa17.55■□□□□ 0.4
CLN3-217ENST00000565354 MRGPRX1Q96LB2 322 aa17.55■□□□□ 0.4
CLN3-217ENST00000565354 ZNF830Q96NB3 372 aaPredicted RBP17.55■□□□□ 0.4
CLN3-217ENST00000565354 CEP44Q9C0F1 390 aa17.55■□□□□ 0.4
CLN3-217ENST00000565354 MKRN2Q9H000 416 aaKnown RBP17.55■□□□□ 0.4
CLN3-217ENST00000565354 LZTFL1Q9NQ48 299 aa17.55■□□□□ 0.4
CLN3-217ENST00000565354 UBA2Q9UBT2 640 aaPredicted RBP17.55■□□□□ 0.4
CLN3-217ENST00000565354 FCF1Q9Y324 198 aaKnown RBP17.55■□□□□ 0.4
CLN3-217ENST00000565354 MFHAS1Q9Y4C4 1052 aa17.55■□□□□ 0.4
CLN3-217ENST00000565354 CKAP5Q14008 2032 aa17.54■□□□□ 0.4
CLN3-217ENST00000565354 ASXL3Q9C0F0 2248 aa17.54■□□□□ 0.4
CLN3-217ENST00000565354 CXorf51AA0A1B0GTR3 108 aa17.54■□□□□ 0.4
CLN3-217ENST00000565354 SMAD6O43541 496 aaKnown RBP17.54■□□□□ 0.4
CLN3-217ENST00000565354 ZRANB2O95218 330 aaKnown RBP eCLIP17.54■□□□□ 0.4
CLN3-217ENST00000565354 VAV1P15498 845 aa17.54■□□□□ 0.4
CLN3-217ENST00000565354 IL4RP24394 825 aa17.54■□□□□ 0.4
CLN3-217ENST00000565354 CETN2P41208 172 aa17.54■□□□□ 0.4
CLN3-217ENST00000565354 COPAP53621 1224 aa17.54■□□□□ 0.4
CLN3-217ENST00000565354 CCDC173Q0VFZ6 552 aa17.54■□□□□ 0.4
CLN3-217ENST00000565354 SFSWAPQ12872 951 aaKnown RBP17.54■□□□□ 0.4
CLN3-217ENST00000565354 SLC14A1Q13336 389 aa17.54■□□□□ 0.4
CLN3-217ENST00000565354 ELAVL3Q14576 367 aaKnown RBP17.54■□□□□ 0.4
CLN3-217ENST00000565354 COL28A1Q2UY09 1125 aa17.54■□□□□ 0.4
CLN3-217ENST00000565354 TTC31Q49AM3 519 aaPredicted RBP17.54■□□□□ 0.4
CLN3-217ENST00000565354 VSIG1Q86XK7 387 aa17.54■□□□□ 0.4
CLN3-217ENST00000565354 MMAAQ8IVH4 418 aaKnown RBP17.54■□□□□ 0.4
CLN3-217ENST00000565354 ARHGAP12Q8IWW6 846 aa17.54■□□□□ 0.4
CLN3-217ENST00000565354 ATPAF2Q8N5M1 289 aa17.54■□□□□ 0.4
CLN3-217ENST00000565354 PCDH20Q8N6Y1 951 aaKnown RBP17.54■□□□□ 0.4
CLN3-217ENST00000565354 UBL4BQ8N7F7 174 aa17.54■□□□□ 0.4
CLN3-217ENST00000565354 PCDH19Q8TAB3 1148 aa17.54■□□□□ 0.4
CLN3-217ENST00000565354 GANCQ8TET4 914 aa17.54■□□□□ 0.4
CLN3-217ENST00000565354 FRS2Q8WU20 508 aa17.54■□□□□ 0.4
CLN3-217ENST00000565354 NSMCE1Q8WV22 266 aa17.54■□□□□ 0.4
CLN3-217ENST00000565354 CASKIN2Q8WXE0 1202 aa17.54■□□□□ 0.4
CLN3-217ENST00000565354 ADAMTS14Q8WXS8 1223 aa17.54■□□□□ 0.4
CLN3-217ENST00000565354 CAMK1GQ96NX5 476 aa17.54■□□□□ 0.4
CLN3-217ENST00000565354 RNF157Q96PX1 679 aa17.54■□□□□ 0.4
CLN3-217ENST00000565354 ALS2CR12Q96Q35 445 aa17.54■□□□□ 0.4
CLN3-217ENST00000565354 TNKS2Q9H2K2 1166 aa17.54■□□□□ 0.4
CLN3-217ENST00000565354 CD248Q9HCU0 757 aa17.54■□□□□ 0.4
CLN3-217ENST00000565354 PPP2R2CQ9Y2T4 447 aa17.54■□□□□ 0.4
CLN3-217ENST00000565354 ACTL7AQ9Y615 435 aa17.54■□□□□ 0.4
CLN3-217ENST00000565354 URB1O60287 2271 aaKnown RBP17.54■□□□□ 0.4
CLN3-217ENST00000565354 CCDC66A2RUB6 948 aa17.53■□□□□ 0.4
CLN3-217ENST00000565354 ZNF487B1APH4 448 aa17.53■□□□□ 0.4
CLN3-217ENST00000565354 C1QTNF3-AMACRE9PGA6 284 aa17.53■□□□□ 0.4
CLN3-217ENST00000565354 APOL1O14791 398 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms