RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, human

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-222	ENST00000564228	CNTN6	Q9UQ52	1028 aa		11.22	□□□□□ -0.61
TCF4-222	ENST00000564228	NUB1	Q9Y5A7	615 aa		11.22	□□□□□ -0.61
TCF4-222	ENST00000564228	CDY1	Q9Y6F8	540 aa		11.22	□□□□□ -0.61
TCF4-222	ENST00000564228	SMIM28	A0A1B0GU29	152 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	RGSL1	A5PLK6	1076 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228		H3BMQ9	156 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	APOC4-APOC2	K7ER74	178 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	KPNA4	O00629	521 aa	Predicted RBP	11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	LSM1	O15116	133 aa	Known RBP	11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	AQP9	O43315	295 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	ZBTB14	O43829	449 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	SNAP91	O60641	907 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	UGT1A9	O60656	530 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	PLIN3	O60664	434 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	CST8	O60676	142 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	ASS1	P00966	412 aa	Known RBP	11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	APOC2	P02655	101 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	UGT1A6	P19224	532 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	UGT1A1	P22309	533 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	UGT1A4	P22310	534 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	GLDC	P23378	1020 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	NFKBIA	P25963	317 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	EPHA3	P29320	983 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	GNA15	P30679	374 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	CYP2C18	P33260	490 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	UGT1A3	P35503	534 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	UGT1A5	P35504	534 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	MAGEA6	P43360	314 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	NUDT2	P50583	147 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	EIF3E	P60228	445 aa	Known RBP	11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	ABCE1	P61221	599 aa	Known RBP	11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	BMPR2	Q13873	1038 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	INSC	Q1MX18	579 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	LRRC26	Q2I0M4	334 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	C1orf53	Q5VUE5	145 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	DNAJC24	Q6P3W2	148 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	SCARA5	Q6ZMJ2	495 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	NECAB2	Q7Z6G3	386 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	DSEL	Q8IZU8	1212 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	PDPR	Q8NCN5	879 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	BEST2	Q8NFU1	509 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	RP9	Q8TA86	221 aa	Known RBP	11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	DUS3L	Q96G46	650 aa	Known RBP	11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	DHRS1	Q96LJ7	313 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	COG8	Q96MW5	612 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	UHRF1	Q96T88	793 aa	Predicted RBP	11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	GAD1	Q99259	594 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	FERMT1	Q9BQL6	677 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	TMEM79	Q9BSE2	394 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	UGT1A7	Q9HAW7	530 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	UGT1A10	Q9HAW8	530 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	UGT1A8	Q9HAW9	530 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	MRPL40	Q9NQ50	206 aa	Known RBP	11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	TMEM39A	Q9NV64	488 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	PNPO	Q9NVS9	261 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	NCKIPSD	Q9NZQ3	722 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	HACD3	Q9P035	362 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	NXF1	Q9UBU9	619 aa	Known RBP	11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	SEPT3	Q9UH03	358 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	EMCN	Q9ULC0	261 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228	DERA	Q9Y315	318 aa		11.21	□□□□□ -0.61
TCF4-222	ENST00000564228		A0A0U1RQF3	1178 aa		11.21	□□□□□ -0.62
TCF4-222	ENST00000564228	HMX2	A2RU54	273 aa		11.21	□□□□□ -0.62
TCF4-222	ENST00000564228		F8VP50	259 aa		11.21	□□□□□ -0.62
TCF4-222	ENST00000564228	ACOT8	O14734	319 aa		11.21	□□□□□ -0.62
TCF4-222	ENST00000564228	RNASEH2A	O75792	299 aa	Known RBP	11.21	□□□□□ -0.62
TCF4-222	ENST00000564228	ATE1	O95260	518 aa		11.21	□□□□□ -0.62
TCF4-222	ENST00000564228	LSM8	O95777	96 aa	Known RBP	11.21	□□□□□ -0.62
TCF4-222	ENST00000564228	CSH1	P0DML2	217 aa		11.21	□□□□□ -0.62
TCF4-222	ENST00000564228	CSH2	P0DML3	217 aa		11.21	□□□□□ -0.62
TCF4-222	ENST00000564228	PIK3R1	P27986	724 aa		11.21	□□□□□ -0.62
TCF4-222	ENST00000564228	RPL10A	P62906	217 aa	Known RBP	11.21	□□□□□ -0.62
TCF4-222	ENST00000564228	CAMK2B	Q13554	666 aa		11.21	□□□□□ -0.62
TCF4-222	ENST00000564228	CUL2	Q13617	745 aa		11.21	□□□□□ -0.62
TCF4-222	ENST00000564228	GPNMB	Q14956	572 aa		11.21	□□□□□ -0.62
TCF4-222	ENST00000564228	PCLAF	Q15004	111 aa		11.21	□□□□□ -0.62
TCF4-222	ENST00000564228	TXNRD3NB	Q6F5E7	133 aa		11.21	□□□□□ -0.62
TCF4-222	ENST00000564228	FRA10AC1	Q70Z53	315 aa		11.21	□□□□□ -0.62
TCF4-222	ENST00000564228	CYS1	Q717R9	158 aa		11.21	□□□□□ -0.62
TCF4-222	ENST00000564228	DEFB128	Q7Z7B8	93 aa		11.21	□□□□□ -0.62
TCF4-222	ENST00000564228	COLGALT2	Q8IYK4	626 aa		11.21	□□□□□ -0.62
TCF4-222	ENST00000564228	FAM71D	Q8N9W8	422 aa		11.21	□□□□□ -0.62
TCF4-222	ENST00000564228	DBF4B	Q8NFT6	615 aa		11.21	□□□□□ -0.62
TCF4-222	ENST00000564228	CDRT15	Q96T59	188 aa		11.21	□□□□□ -0.62
TCF4-222	ENST00000564228	DCUN1D5	Q9BTE7	237 aa		11.21	□□□□□ -0.62
TCF4-222	ENST00000564228	XYLT2	Q9H1B5	865 aa		11.21	□□□□□ -0.62
TCF4-222	ENST00000564228	GBA3	Q9H227	469 aa		11.21	□□□□□ -0.62
TCF4-222	ENST00000564228	GOLGA2P5	Q9HBQ8	144 aa		11.21	□□□□□ -0.62
TCF4-222	ENST00000564228	SMYD2	Q9NRG4	433 aa		11.21	□□□□□ -0.62
TCF4-222	ENST00000564228	DCDC2	Q9UHG0	476 aa		11.21	□□□□□ -0.62
TCF4-222	ENST00000564228	UBQLN1	Q9UMX0	589 aa	Known RBP	11.21	□□□□□ -0.62
TCF4-222	ENST00000564228	ALPK3	Q96L96	1907 aa		11.2	□□□□□ -0.62
TCF4-222	ENST00000564228	TTC3	P53804	2025 aa		11.2	□□□□□ -0.62
TCF4-222	ENST00000564228	ARL5C	A6NH57	179 aa		11.2	□□□□□ -0.62
TCF4-222	ENST00000564228	CFAP99	D6REC4	459 aa		11.2	□□□□□ -0.62
TCF4-222	ENST00000564228	PTGES	O14684	152 aa		11.2	□□□□□ -0.62
TCF4-222	ENST00000564228	GIPC1	O14908	333 aa		11.2	□□□□□ -0.62
TCF4-222	ENST00000564228	ZMPSTE24	O75844	475 aa		11.2	□□□□□ -0.62
TCF4-222	ENST00000564228	STAMBP	O95630	424 aa		11.2	□□□□□ -0.62
TCF4-222	ENST00000564228	CLTB	P09497	229 aa		11.2	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms