RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 HIF1AQ16665 826 aa13□□□□□ -0.33
CLK3-214ENST00000564096 ACCSLQ4AC99 568 aa13□□□□□ -0.33
CLK3-214ENST00000564096 FNDC3BQ53EP0 1204 aaKnown RBP13□□□□□ -0.33
CLK3-214ENST00000564096 ZDHHC24Q6UX98 284 aa13□□□□□ -0.33
CLK3-214ENST00000564096 CENPUQ71F23 418 aa13□□□□□ -0.33
CLK3-214ENST00000564096 GSPT2Q8IYD1 628 aaKnown RBP13□□□□□ -0.33
CLK3-214ENST00000564096 PDIK1LQ8N165 341 aa13□□□□□ -0.33
CLK3-214ENST00000564096 PDCD7Q8N8D1 485 aaKnown RBP13□□□□□ -0.33
CLK3-214ENST00000564096 NAT8LQ8N9F0 302 aa13□□□□□ -0.33
CLK3-214ENST00000564096 TSEN2Q8NCE0 465 aaKnown RBP13□□□□□ -0.33
CLK3-214ENST00000564096 MCUQ8NE86 351 aa13□□□□□ -0.33
CLK3-214ENST00000564096 ZNF419Q96HQ0 510 aaPredicted RBP13□□□□□ -0.33
CLK3-214ENST00000564096 HINFPQ9BQA5 517 aa13□□□□□ -0.33
CLK3-214ENST00000564096 SLC2A4RGQ9NR83 387 aa13□□□□□ -0.33
CLK3-214ENST00000564096 ELOVL2Q9NXB9 296 aa13□□□□□ -0.33
CLK3-214ENST00000564096 LHX3Q9UBR4 397 aa13□□□□□ -0.33
CLK3-214ENST00000564096 SZT2Q5T011 3432 aa13□□□□□ -0.33
CLK3-214ENST00000564096 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.99□□□□□ -0.33
CLK3-214ENST00000564096 TRIM24O15164 1050 aa12.99□□□□□ -0.33
CLK3-214ENST00000564096 ATP9BO43861 1147 aa12.99□□□□□ -0.33
CLK3-214ENST00000564096 PPFIA2O75334 1257 aa12.99□□□□□ -0.33
CLK3-214ENST00000564096 TMEM63AO94886 807 aa12.99□□□□□ -0.33
CLK3-214ENST00000564096 SUN1O94901 812 aa12.99□□□□□ -0.33
CLK3-214ENST00000564096 MLNP12872 115 aa12.99□□□□□ -0.33
CLK3-214ENST00000564096 ECHS1P30084 290 aa12.99□□□□□ -0.33
CLK3-214ENST00000564096 CTSOP43234 321 aaPredicted RBP12.99□□□□□ -0.33
CLK3-214ENST00000564096 CSNK1DP48730 415 aa12.99□□□□□ -0.33
CLK3-214ENST00000564096 STK19P49842 368 aaPredicted RBP12.99□□□□□ -0.33
CLK3-214ENST00000564096 SCNN1BP51168 640 aa12.99□□□□□ -0.33
CLK3-214ENST00000564096 ZP2Q05996 745 aa12.99□□□□□ -0.33
CLK3-214ENST00000564096 GRSF1Q12849 480 aaKnown RBP eCLIP12.99□□□□□ -0.33
CLK3-214ENST00000564096 SLMAPQ14BN4 828 aa12.99□□□□□ -0.33
CLK3-214ENST00000564096 CYTH1Q15438 398 aa12.99□□□□□ -0.33
CLK3-214ENST00000564096 ANKRD22Q5VYY1 191 aa12.99□□□□□ -0.33
CLK3-214ENST00000564096 CCNI2Q6ZMN8 369 aaPredicted RBP12.99□□□□□ -0.33
CLK3-214ENST00000564096 PHTF2Q8N3S3 785 aa12.99□□□□□ -0.33
CLK3-214ENST00000564096 PGBD5Q8N414 524 aa12.99□□□□□ -0.33
CLK3-214ENST00000564096 RYBPQ8N488 228 aaPredicted RBP12.99□□□□□ -0.33
CLK3-214ENST00000564096 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.99□□□□□ -0.33
CLK3-214ENST00000564096 PAF1Q8N7H5 531 aa12.99□□□□□ -0.33
CLK3-214ENST00000564096 IPMKQ8NFU5 416 aa12.99□□□□□ -0.33
CLK3-214ENST00000564096 OR2AP1Q8NGE2 309 aa12.99□□□□□ -0.33
CLK3-214ENST00000564096 IFT43Q96FT9 208 aa12.99□□□□□ -0.33
CLK3-214ENST00000564096 EXOC2Q96KP1 924 aa12.99□□□□□ -0.33
CLK3-214ENST00000564096 RPL10LQ96L21 214 aaKnown RBP12.99□□□□□ -0.33
CLK3-214ENST00000564096 RBM15Q96T37 977 aaKnown RBP eCLIP12.99□□□□□ -0.338e-7■■■□□ 18.1
CLK3-214ENST00000564096 TBL1YQ9BQ87 522 aa12.99□□□□□ -0.33
CLK3-214ENST00000564096 MLPHQ9BV36 600 aaPredicted RBP12.99□□□□□ -0.33
CLK3-214ENST00000564096 TM6SF2Q9BZW4 377 aa12.99□□□□□ -0.33
CLK3-214ENST00000564096 ZDHHC18Q9NUE0 388 aa12.99□□□□□ -0.33
CLK3-214ENST00000564096 DUSP12Q9UNI6 340 aa12.99□□□□□ -0.33
CLK3-214ENST00000564096 CHD5Q8TDI0 1954 aa12.99□□□□□ -0.33
CLK3-214ENST00000564096 KIAA1549LQ6ZVL6 1849 aa12.99□□□□□ -0.33
CLK3-214ENST00000564096 BRWD1Q9NSI6 2320 aa12.99□□□□□ -0.33
CLK3-214ENST00000564096 K7ERQ8 282 aa12.98□□□□□ -0.33
CLK3-214ENST00000564096 DYNC1I1O14576 645 aa12.98□□□□□ -0.33
CLK3-214ENST00000564096 MUSKO15146 869 aa12.98□□□□□ -0.33
CLK3-214ENST00000564096 EIF3HO15372 352 aaKnown RBP eCLIP12.98□□□□□ -0.33
CLK3-214ENST00000564096 PMPCBO75439 489 aa12.98□□□□□ -0.33
CLK3-214ENST00000564096 CD160O95971 181 aa12.98□□□□□ -0.33
CLK3-214ENST00000564096 MT-CO1P00395 513 aa12.98□□□□□ -0.33
CLK3-214ENST00000564096 CR2P20023 1033 aa12.98□□□□□ -0.33
CLK3-214ENST00000564096 DRD1P21728 446 aa12.98□□□□□ -0.33
CLK3-214ENST00000564096 SERPINA4P29622 427 aa12.98□□□□□ -0.33
CLK3-214ENST00000564096 SOX9P48436 509 aa12.98□□□□□ -0.33
CLK3-214ENST00000564096 CDH17Q12864 832 aa12.98□□□□□ -0.33
CLK3-214ENST00000564096 KCTD19Q17RG1 926 aaPredicted RBP12.98□□□□□ -0.33
CLK3-214ENST00000564096 CFAP58Q5T655 872 aa12.98□□□□□ -0.33
CLK3-214ENST00000564096 TMEM215Q68D42 235 aa12.98□□□□□ -0.33
CLK3-214ENST00000564096 SERPINA13PQ6UXR4 307 aa12.98□□□□□ -0.33
CLK3-214ENST00000564096 TRMT11Q7Z4G4 463 aaKnown RBP12.98□□□□□ -0.33
CLK3-214ENST00000564096 CCDC25Q86WR0 208 aa12.98□□□□□ -0.33
CLK3-214ENST00000564096 KLHDC8BQ8IXV7 354 aa12.98□□□□□ -0.33
CLK3-214ENST00000564096 DNAAF3Q8N9W5 541 aa12.98□□□□□ -0.33
CLK3-214ENST00000564096 ARRDC2Q8TBH0 407 aa12.98□□□□□ -0.33
CLK3-214ENST00000564096 CYB5D2Q8WUJ1 264 aa12.98□□□□□ -0.33
CLK3-214ENST00000564096 OXNAD1Q96HP4 312 aaPredicted RBP12.98□□□□□ -0.33
CLK3-214ENST00000564096 FEM1CQ96JP0 617 aa12.98□□□□□ -0.33
CLK3-214ENST00000564096 SERPINB12Q96P63 405 aa12.98□□□□□ -0.33
CLK3-214ENST00000564096 TUBGCP5Q96RT8 1024 aa12.98□□□□□ -0.33
CLK3-214ENST00000564096 FICDQ9BVA6 458 aa12.98□□□□□ -0.33
CLK3-214ENST00000564096 ATP13A3Q9H7F0 1226 aa12.98□□□□□ -0.33
CLK3-214ENST00000564096 SORCS3Q9UPU3 1222 aa12.98□□□□□ -0.33
CLK3-214ENST00000564096 ARIH1Q9Y4X5 557 aaPredicted RBP12.98□□□□□ -0.33
CLK3-214ENST00000564096 ACTL7AQ9Y615 435 aa12.98□□□□□ -0.33
CLK3-214ENST00000564096 EDDM13A0A1B0GTR0 161 aa12.97□□□□□ -0.33
CLK3-214ENST00000564096 PRRT4C9JH25 899 aa12.97□□□□□ -0.33
CLK3-214ENST00000564096 GOLGA8MH3BSY2 632 aa12.97□□□□□ -0.33
CLK3-214ENST00000564096 MAN2B1O00754 1011 aa12.97□□□□□ -0.33
CLK3-214ENST00000564096 SMAD6O43541 496 aaKnown RBP12.97□□□□□ -0.33
CLK3-214ENST00000564096 SOCS5O75159 536 aa12.97□□□□□ -0.33
CLK3-214ENST00000564096 MT-CYBP00156 380 aaPredicted RBP12.97□□□□□ -0.33
CLK3-214ENST00000564096 MYBL2P10244 700 aa12.97□□□□□ -0.33
CLK3-214ENST00000564096 HLA-DPA1P20036 260 aa12.97□□□□□ -0.33
CLK3-214ENST00000564096 TNFRSF4P43489 277 aa12.97□□□□□ -0.33
CLK3-214ENST00000564096 WNT3AP56704 352 aa12.97□□□□□ -0.33
CLK3-214ENST00000564096 SKOR1P84550 965 aa12.97□□□□□ -0.33
CLK3-214ENST00000564096 BCL2L1Q07817 233 aa12.97□□□□□ -0.33
CLK3-214ENST00000564096 NIPAL4Q0D2K0 466 aa12.97□□□□□ -0.33
CLK3-214ENST00000564096 TRADDQ15628 312 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms