RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 HS1BP3Q53T59 392 aa16.02■□□□□ 0.16
CLK3-211ENST00000563297 STRADAQ7RTN6 431 aa16.02■□□□□ 0.16
CLK3-211ENST00000563297 TMC6Q7Z403 805 aa16.02■□□□□ 0.16
CLK3-211ENST00000563297 DCBLD1Q8N8Z6 715 aa16.02■□□□□ 0.16
CLK3-211ENST00000563297 BBC3Q96PG8 261 aaPredicted RBP16.02■□□□□ 0.16
CLK3-211ENST00000563297 PCDHB18PQ96TA0 734 aa16.02■□□□□ 0.16
CLK3-211ENST00000563297 KLF6Q99612 283 aaPredicted RBP16.02■□□□□ 0.16
CLK3-211ENST00000563297 C11orf70Q9BRQ4 267 aa16.02■□□□□ 0.16
CLK3-211ENST00000563297 C1QTNF2Q9BXJ5 285 aa16.02■□□□□ 0.16
CLK3-211ENST00000563297 MAGEH1Q9H213 219 aa16.02■□□□□ 0.16
CLK3-211ENST00000563297 ZDHHC6Q9H6R6 413 aa16.02■□□□□ 0.16
CLK3-211ENST00000563297 GPR27Q9NS67 375 aa16.02■□□□□ 0.16
CLK3-211ENST00000563297 FAM207AQ9NSI2 230 aaPredicted RBP16.02■□□□□ 0.16
CLK3-211ENST00000563297 NEU3Q9UQ49 428 aa16.02■□□□□ 0.16
CLK3-211ENST00000563297 BPTFQ12830 3046 aa16.01■□□□□ 0.15
CLK3-211ENST00000563297 IGLON5A6NGN9 336 aa16.01■□□□□ 0.15
CLK3-211ENST00000563297 C16orf96A6NNT2 1141 aa16.01■□□□□ 0.15
CLK3-211ENST00000563297 SCAMP1O15126 338 aa16.01■□□□□ 0.15
CLK3-211ENST00000563297 LRIG2O94898 1065 aa16.01■□□□□ 0.15
CLK3-211ENST00000563297 MT-CO3P00414 261 aa16.01■□□□□ 0.15
CLK3-211ENST00000563297 PLEKP08567 350 aaPredicted RBP16.01■□□□□ 0.15
CLK3-211ENST00000563297 KRT3P12035 628 aa16.01■□□□□ 0.15
CLK3-211ENST00000563297 CKMT1AP12532 417 aa16.01■□□□□ 0.15
CLK3-211ENST00000563297 RFC1P35251 1148 aaPredicted RBP16.01■□□□□ 0.15
CLK3-211ENST00000563297 ABL2P42684 1182 aa16.01■□□□□ 0.15
CLK3-211ENST00000563297 HDAC4P56524 1084 aa16.01■□□□□ 0.15
CLK3-211ENST00000563297 FZD2Q14332 565 aa16.01■□□□□ 0.15
CLK3-211ENST00000563297 ACAP1Q15027 740 aa16.01■□□□□ 0.15
CLK3-211ENST00000563297 TRIM72Q6ZMU5 477 aa16.01■□□□□ 0.15
CLK3-211ENST00000563297 OR6K2Q8NGY2 324 aa16.01■□□□□ 0.15
CLK3-211ENST00000563297 LENG8Q96PV6 779 aaPredicted RBP16.01■□□□□ 0.15
CLK3-211ENST00000563297 LMBRD1Q9NUN5 540 aa16.01■□□□□ 0.15
CLK3-211ENST00000563297 FANCLQ9NW38 375 aa16.01■□□□□ 0.15
CLK3-211ENST00000563297 DNAJC28Q9NX36 388 aa16.01■□□□□ 0.15
CLK3-211ENST00000563297 SIK3Q9Y2K2 1263 aa16.01■□□□□ 0.15
CLK3-211ENST00000563297 PTPRQQ9UMZ3 2332 aa16.01■□□□□ 0.15
CLK3-211ENST00000563297 SMG1Q96Q15 3661 aaKnown RBP16■□□□□ 0.15
CLK3-211ENST00000563297 SPTY2D1-AS1A0A0U1RR47 76 aa16■□□□□ 0.15
CLK3-211ENST00000563297 NEMP2A6NFY4 417 aa16■□□□□ 0.15
CLK3-211ENST00000563297 TSPAN6O43657 245 aa16■□□□□ 0.15
CLK3-211ENST00000563297 POP4O95707 220 aaKnown RBP16■□□□□ 0.15
CLK3-211ENST00000563297 CSF2P04141 144 aa16■□□□□ 0.15
CLK3-211ENST00000563297 MYF5P13349 255 aa16■□□□□ 0.15
CLK3-211ENST00000563297 STAT1P42224 750 aa16■□□□□ 0.15
CLK3-211ENST00000563297 ABCG1P45844 678 aa16■□□□□ 0.15
CLK3-211ENST00000563297 GEMIN4P57678 1058 aaKnown RBP16■□□□□ 0.15
CLK3-211ENST00000563297 HNRNPKP61978 463 aaKnown RBP eCLIP16■□□□□ 0.15
CLK3-211ENST00000563297 SGCGQ13326 291 aa16■□□□□ 0.15
CLK3-211ENST00000563297 MYLK3Q32MK0 819 aa16■□□□□ 0.15
CLK3-211ENST00000563297 ZNF805Q5CZA5 627 aa16■□□□□ 0.15
CLK3-211ENST00000563297 FKBP15Q5T1M5 1219 aa16■□□□□ 0.15
CLK3-211ENST00000563297 WDR59Q6PJI9 974 aa16■□□□□ 0.15
CLK3-211ENST00000563297 KYAT3Q6YP21 454 aaKnown RBP16■□□□□ 0.15
CLK3-211ENST00000563297 LEKR1Q6ZMV7 388 aa16■□□□□ 0.15
CLK3-211ENST00000563297 CLEC17AQ6ZS10 378 aa16■□□□□ 0.15
CLK3-211ENST00000563297 PTAR1Q7Z6K3 402 aaPredicted RBP16■□□□□ 0.15
CLK3-211ENST00000563297 RYBPQ8N488 228 aaPredicted RBP16■□□□□ 0.15
CLK3-211ENST00000563297 CCDC185Q8N715 623 aa16■□□□□ 0.15
CLK3-211ENST00000563297 OR2AP1Q8NGE2 309 aa16■□□□□ 0.15
CLK3-211ENST00000563297 FAM172AQ8WUF8 416 aa16■□□□□ 0.15
CLK3-211ENST00000563297 RAB7BQ96AH8 199 aa16■□□□□ 0.15
CLK3-211ENST00000563297 TBC1D31Q96DN5 1066 aa16■□□□□ 0.15
CLK3-211ENST00000563297 APOLD1Q96LR9 279 aa16■□□□□ 0.15
CLK3-211ENST00000563297 NLGN3Q9NZ94 848 aa16■□□□□ 0.15
CLK3-211ENST00000563297 ADAM22Q9P0K1 906 aa16■□□□□ 0.15
CLK3-211ENST00000563297 HPCAL4Q9UM19 191 aa16■□□□□ 0.15
CLK3-211ENST00000563297 LY6G6EA0A0G2JKS1 128 aa15.99■□□□□ 0.15
CLK3-211ENST00000563297 K7ESM1 405 aa15.99■□□□□ 0.15
CLK3-211ENST00000563297 KRIT1O00522 736 aa15.99■□□□□ 0.15
CLK3-211ENST00000563297 KDELR3O43731 214 aa15.99■□□□□ 0.15
CLK3-211ENST00000563297 OPA1O60313 960 aa15.99■□□□□ 0.15
CLK3-211ENST00000563297 RAMP2O60895 175 aa15.99■□□□□ 0.15
CLK3-211ENST00000563297 NEBLO76041 1014 aa15.99■□□□□ 0.15
CLK3-211ENST00000563297 GSRP00390 522 aa15.99■□□□□ 0.15
CLK3-211ENST00000563297 ALPPL2P10696 532 aa15.99■□□□□ 0.15
CLK3-211ENST00000563297 RABIFP47224 123 aa15.99■□□□□ 0.15
CLK3-211ENST00000563297 GSCP56915 257 aaPredicted RBP15.99■□□□□ 0.15
CLK3-211ENST00000563297 SNRPD1P62314 119 aaKnown RBP15.99■□□□□ 0.15
CLK3-211ENST00000563297 POLD3Q15054 466 aaPredicted RBP15.99■□□□□ 0.15
CLK3-211ENST00000563297 CDCP2Q5VXM1 449 aa15.99■□□□□ 0.15
CLK3-211ENST00000563297 KDM7AQ6ZMT4 941 aa15.99■□□□□ 0.15
CLK3-211ENST00000563297 ZSCAN30Q86W11 494 aa15.99■□□□□ 0.15
CLK3-211ENST00000563297 FAM181AQ8N9Y4 354 aa15.99■□□□□ 0.15
CLK3-211ENST00000563297 ASB12Q8WXK4 309 aa15.99■□□□□ 0.15
CLK3-211ENST00000563297 FGF11Q92914 225 aa15.99■□□□□ 0.15
CLK3-211ENST00000563297 NTAN1Q96AB6 310 aa15.99■□□□□ 0.15
CLK3-211ENST00000563297 KLHL32Q96NJ5 620 aa15.99■□□□□ 0.15
CLK3-211ENST00000563297 NOL6Q9H6R4 1146 aaKnown RBP15.99■□□□□ 0.15
CLK3-211ENST00000563297 KLF15Q9UIH9 416 aa15.99■□□□□ 0.15
CLK3-211ENST00000563297 GGT7Q9UJ14 662 aa15.99■□□□□ 0.15
CLK3-211ENST00000563297 DAAM1Q9Y4D1 1078 aa15.99■□□□□ 0.15
CLK3-211ENST00000563297 U3KQA8 63 aa15.99■□□□□ 0.15
CLK3-211ENST00000563297 RP1P56715 2156 aa15.99■□□□□ 0.15
CLK3-211ENST00000563297 SIGLEC16A6NMB1 481 aa15.98■□□□□ 0.15
CLK3-211ENST00000563297 NEMP1O14524 444 aa15.98■□□□□ 0.15
CLK3-211ENST00000563297 FPGTO14772 594 aa15.98■□□□□ 0.15
CLK3-211ENST00000563297 SPINT1O43278 529 aa15.98■□□□□ 0.15
CLK3-211ENST00000563297 BRINP1O60477 761 aa15.98■□□□□ 0.15
CLK3-211ENST00000563297 UGT2B4P06133 528 aa15.98■□□□□ 0.15
CLK3-211ENST00000563297 TPM2P07951 284 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 141.3 ms