RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 ZSWIM3Q96MP5 696 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 SMIM14Q96QK8 99 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 TBL1YQ9BQ87 522 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 MLPHQ9BV36 600 aaPredicted RBP5.52□□□□□ -1.53
VPS13C-209ENST00000560637 SMOC2Q9H3U7 446 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 CHRAC1Q9NRG0 131 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.52□□□□□ -1.533e-9■■■□□ 17
VPS13C-209ENST00000560637 HBS1LQ9Y450 684 aaKnown RBP5.52□□□□□ -1.53
VPS13C-209ENST00000560637 RAI2Q9Y5P3 530 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 RBBP6Q7Z6E9 1792 aaKnown RBP5.52□□□□□ -1.53
VPS13C-209ENST00000560637 TCRBV7S3A2A0A539 114 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 ANKRD65E5RJM6 399 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 NCAM2O15394 837 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 OPHN1O60890 802 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 LUC7L3O95232 432 aaKnown RBP5.52□□□□□ -1.53
VPS13C-209ENST00000560637 S100BP04271 92 aaPredicted RBP5.52□□□□□ -1.53
VPS13C-209ENST00000560637 VAV1P15498 845 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 FMO4P31512 558 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 FDFT1P37268 417 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 MAGEA11P43364 429 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 PEX5P50542 639 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 ERFP50548 548 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 CDK18Q07002 472 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 CDH17Q12864 832 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 RPS6KA2Q15349 733 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 TEX44Q53QW1 395 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 NCBP2-AS2Q69YL0 99 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 TANGO2Q6ICL3 276 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 TRAF7Q6Q0C0 670 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 TRMT11Q7Z4G4 463 aaKnown RBP5.52□□□□□ -1.53
VPS13C-209ENST00000560637 LRRC6Q86X45 466 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 TCEAL8Q8IYN2 117 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 UNC5BQ8IZJ1 945 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 C2orf73Q8N5S3 287 aaPredicted RBP5.52□□□□□ -1.53
VPS13C-209ENST00000560637 CELF5Q8N6W0 485 aaKnown RBP5.52□□□□□ -1.53
VPS13C-209ENST00000560637 NPWQ8N729 165 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 MAML1Q92585 1016 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 IRF7Q92985 503 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 HDAC10Q969S8 669 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 WBP2Q969T9 261 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 ASB8Q9H765 288 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 CLIC5Q9NZA1 410 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 LCA5LO95447 670 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 DNTTP04053 509 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 NR1D1P20393 614 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 CD70P32970 193 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 NR2C2P49116 596 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 PGGT1BP53609 377 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 GTF2H3Q13889 308 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 RCN2Q14257 317 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 EFTUD2Q15029 972 aaKnown RBP eCLIP5.51□□□□□ -1.53
VPS13C-209ENST00000560637 SLC5A9Q2M3M2 681 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 KBTBD12Q3ZCT8 623 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 ARSIQ5FYB1 569 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 TRIM67Q6ZTA4 783 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 PHACTR4Q8IZ21 702 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 C12orf50Q8NA57 414 aaPredicted RBP5.51□□□□□ -1.53
VPS13C-209ENST00000560637 OR4K2Q8NGD2 314 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 RLN3Q8WXF3 142 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 SMARCD2Q92925 531 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 AZIN2Q96A70 460 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 ATP13A3Q9H7F0 1226 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 GLOD4Q9HC38 313 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 XAB2Q9HCS7 855 aaKnown RBP5.51□□□□□ -1.53
VPS13C-209ENST00000560637 SYBUQ9NX95 663 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 MYH15Q9Y2K3 1946 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 GJB3O75712 270 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 FAM155BO75949 473 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 HLA-DQB2P05538 268 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 PRLRP16471 622 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 SOX11P35716 441 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 PPARGP37231 505 aaPredicted RBP5.51□□□□□ -1.53
VPS13C-209ENST00000560637 CCR2P41597 374 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 CCT5P48643 541 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 SERPINH1P50454 418 aaKnown RBP5.51□□□□□ -1.53
VPS13C-209ENST00000560637 THOP1P52888 689 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 ATXN3P54252 364 aaPredicted RBP5.51□□□□□ -1.53
VPS13C-209ENST00000560637 CDH4P55283 916 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 GUCY1A3Q02108 690 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 PTP4A2Q12974 167 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 CAMK2BQ13554 666 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 CSHL1Q14406 222 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 PON2Q15165 354 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 SETMARQ53H47 684 aaPredicted RBP5.51□□□□□ -1.53
VPS13C-209ENST00000560637 ERAP2Q6P179 960 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 PSTKQ8IV42 348 aaKnown RBP5.51□□□□□ -1.53
VPS13C-209ENST00000560637 ALLCQ8N6M5 410 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 ARFGAP1Q8N6T3 406 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 N4BP2L2Q92802 583 aaPredicted RBP5.51□□□□□ -1.53
VPS13C-209ENST00000560637 PKNOX2Q96KN3 472 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 VN1R3Q9BXE9 311 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 NEUROG2Q9H2A3 272 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 TRABDQ9H4I3 376 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 LRRC40Q9H9A6 602 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 VPS51Q9UID3 782 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 PIAS3Q9Y6X2 628 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 ASCC3Q8N3C0 2202 aaKnown RBP5.51□□□□□ -1.53
VPS13C-209ENST00000560637 A0A0G2JND7 137 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 OR2AG2A6NM03 316 aa5.51□□□□□ -1.53
VPS13C-209ENST00000560637 UGT1A9O60656 530 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms