RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 ACTN3Q08043 901 aaPredicted RBP18.07■□□□□ 0.48
SNX1-208ENST00000559844 BMPR2Q13873 1038 aa18.07■□□□□ 0.48
SNX1-208ENST00000559844 MS4A13Q5J8X5 152 aa18.07■□□□□ 0.48
SNX1-208ENST00000559844 PRSS36Q5K4E3 855 aa18.07■□□□□ 0.48
SNX1-208ENST00000559844 C10orf120Q5SQS8 335 aa18.07■□□□□ 0.48
SNX1-208ENST00000559844 RNF43Q68DV7 783 aa18.07■□□□□ 0.48
SNX1-208ENST00000559844 PACS1Q6VY07 963 aa18.07■□□□□ 0.48
SNX1-208ENST00000559844 ARHGAP36Q6ZRI8 547 aa18.07■□□□□ 0.48
SNX1-208ENST00000559844 CNTD1Q8N815 330 aa18.07■□□□□ 0.48
SNX1-208ENST00000559844 GBP7Q8N8V2 638 aaPredicted RBP18.07■□□□□ 0.48
SNX1-208ENST00000559844 SERBP1Q8NC51 408 aaKnown RBP eCLIP18.07■□□□□ 0.48
SNX1-208ENST00000559844 SHKBP1Q8TBC3 707 aa18.07■□□□□ 0.48
SNX1-208ENST00000559844 ACMSDQ8TDX5 336 aa18.07■□□□□ 0.48
SNX1-208ENST00000559844 USP33Q8TEY7 942 aa18.07■□□□□ 0.48
SNX1-208ENST00000559844 FATE1Q969F0 183 aa18.07■□□□□ 0.48
SNX1-208ENST00000559844 CDK5RAP1Q96SZ6 601 aaKnown RBP18.07■□□□□ 0.48
SNX1-208ENST00000559844 GLOD4Q9HC38 313 aa18.07■□□□□ 0.48
SNX1-208ENST00000559844 TXNDC16Q9P2K2 825 aa18.07■□□□□ 0.48
SNX1-208ENST00000559844 MRPS23Q9Y3D9 190 aaKnown RBP18.07■□□□□ 0.48
SNX1-208ENST00000559844 FAM237BA0A1B0GVD1 139 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 ZNF197O14709 1029 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 NEBLO76041 1014 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 GSTA1P08263 222 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 LIG3P49916 1009 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 RING1Q06587 406 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 MROH9Q5TGP6 573 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 TMEM135Q86UB9 458 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 TRIM42Q8IWZ5 723 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 ZNF683Q8IZ20 524 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 UMODL1-AS1Q8N2C9 162 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 ING5Q8WYH8 240 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 MRPS31Q92665 395 aaKnown RBP18.06■□□□□ 0.48
SNX1-208ENST00000559844 RIPOR3Q96MK2 946 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 FAM111AQ96PZ2 611 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 MANSC1Q9H8J5 431 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 HAUS2Q9NVX0 235 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 TMEM248Q9NWD8 314 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 MPP6Q9NZW5 540 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 ZFATQ9P243 1243 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 DOCK8Q8NF50 2099 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 USP12O75317 370 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 IGLV3-27P01718 113 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 PAPOLAP51003 745 aaKnown RBP18.06■□□□□ 0.48
SNX1-208ENST00000559844 SF3A3Q12874 501 aaKnown RBP eCLIP18.06■□□□□ 0.485e-6■■■■■ 39.5
SNX1-208ENST00000559844 TEAD2Q15562 447 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 STXBP5Q5T5C0 1151 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 SNX30Q5VWJ9 437 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 ITFG1Q8TB96 612 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 SPOCK2Q92563 424 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 ZNF669Q96BR6 464 aaPredicted RBP18.06■□□□□ 0.48
SNX1-208ENST00000559844 CPNE1Q99829 537 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 TRPC7Q9HCX4 862 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 SOX13Q9UN79 622 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 PLLPQ9Y342 182 aa18.06■□□□□ 0.48
SNX1-208ENST00000559844 IGLV3-10A0A075B6K4 115 aa18.05■□□□□ 0.48
SNX1-208ENST00000559844 SLC12A8A0AV02 714 aa18.05■□□□□ 0.48
SNX1-208ENST00000559844 C2orf78A6NCI8 922 aa18.05■□□□□ 0.48
SNX1-208ENST00000559844 MOSPD3O75425 235 aa18.05■□□□□ 0.48
SNX1-208ENST00000559844 FSHRP23945 695 aa18.05■□□□□ 0.48
SNX1-208ENST00000559844 CRHR1P34998 444 aa18.05■□□□□ 0.48
SNX1-208ENST00000559844 GP5P40197 560 aa18.05■□□□□ 0.48
SNX1-208ENST00000559844 GRTP1Q5TC63 336 aa18.05■□□□□ 0.48
SNX1-208ENST00000559844 FYB2Q5VWT5 728 aa18.05■□□□□ 0.48
SNX1-208ENST00000559844 TXNDC8Q6A555 127 aa18.05■□□□□ 0.48
SNX1-208ENST00000559844 OTOP3Q7RTS5 596 aa18.05■□□□□ 0.48
SNX1-208ENST00000559844 UNC5BQ8IZJ1 945 aa18.05■□□□□ 0.48
SNX1-208ENST00000559844 ZNF276Q8N554 614 aa18.05■□□□□ 0.48
SNX1-208ENST00000559844 CCDC63Q8NA47 563 aa18.05■□□□□ 0.48
SNX1-208ENST00000559844 RASSF4Q9H2L5 321 aa18.05■□□□□ 0.48
SNX1-208ENST00000559844 CCSER2Q9H7U1 834 aa18.05■□□□□ 0.48
SNX1-208ENST00000559844 IPO11Q9UI26 975 aaKnown RBP18.05■□□□□ 0.48
SNX1-208ENST00000559844 HELZP42694 1942 aaKnown RBP18.05■□□□□ 0.48
SNX1-208ENST00000559844 HMX2A2RU54 273 aa18.04■□□□□ 0.48
SNX1-208ENST00000559844 WDR91A4D1P6 747 aa18.04■□□□□ 0.48
SNX1-208ENST00000559844 TLR5O60602 858 aa18.04■□□□□ 0.48
SNX1-208ENST00000559844 NEFHP12036 1026 aa18.04■□□□□ 0.48
SNX1-208ENST00000559844 CEBPBP17676 345 aa18.04■□□□□ 0.48
SNX1-208ENST00000559844 MTHFRP42898 656 aa18.04■□□□□ 0.48
SNX1-208ENST00000559844 OLIG2Q13516 323 aa18.04■□□□□ 0.48
SNX1-208ENST00000559844 ANKRD20A4Q4UJ75 823 aa18.04■□□□□ 0.48
SNX1-208ENST00000559844 ARHGAP15Q53QZ3 475 aa18.04■□□□□ 0.48
SNX1-208ENST00000559844 HECTD3Q5T447 861 aa18.04■□□□□ 0.48
SNX1-208ENST00000559844 GET4Q7L5D6 327 aaPredicted RBP18.04■□□□□ 0.48
SNX1-208ENST00000559844 MIB1Q86YT6 1006 aa18.04■□□□□ 0.48
SNX1-208ENST00000559844 CCDC117Q8IWD4 279 aaPredicted RBP18.04■□□□□ 0.48
SNX1-208ENST00000559844 TBL1YQ9BQ87 522 aa18.04■□□□□ 0.48
SNX1-208ENST00000559844 NDFIP2Q9NV92 336 aa18.04■□□□□ 0.48
SNX1-208ENST00000559844 RBM22Q9NW64 420 aaKnown RBP eCLIP18.04■□□□□ 0.48
SNX1-208ENST00000559844 DRGXA6NNA5 263 aa18.04■□□□□ 0.48
SNX1-208ENST00000559844 ATP9BO43861 1147 aa18.04■□□□□ 0.48
SNX1-208ENST00000559844 TROVE2P10155 538 aaKnown RBP eCLIP18.04■□□□□ 0.48
SNX1-208ENST00000559844 SERPINB4P48594 390 aa18.04■□□□□ 0.48
SNX1-208ENST00000559844 CBX2Q14781 532 aaPredicted RBP18.04■□□□□ 0.48
SNX1-208ENST00000559844 GPR158Q5T848 1215 aa18.04■□□□□ 0.48
SNX1-208ENST00000559844 NDUFAF2Q8N183 169 aa18.04■□□□□ 0.48
SNX1-208ENST00000559844 MAB21L3Q8N8X9 362 aa18.04■□□□□ 0.48
SNX1-208ENST00000559844 FCRL3Q96P31 734 aaPredicted RBP18.04■□□□□ 0.48
SNX1-208ENST00000559844 NACA2Q9H009 215 aa18.04■□□□□ 0.48
SNX1-208ENST00000559844 SLCO1B3Q9NPD5 702 aa18.04■□□□□ 0.48
SNX1-208ENST00000559844 PCMTD2Q9NV79 361 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms