RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 ZBTB3Q9H5J0 574 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 NOL11Q9H8H0 719 aaKnown RBP13.98□□□□□ -0.17
SHMT2-226ENST00000556825 WDR70Q9NW82 654 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 TMEM5Q9Y2B1 443 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 STON1Q9Y6Q2 735 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 GSG1L2A8MUP6 293 aa13.97□□□□□ -0.17
SHMT2-226ENST00000556825 H0YIN7 160 aa13.97□□□□□ -0.17
SHMT2-226ENST00000556825 FOXN3O00409 490 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-226ENST00000556825 DCXO43602 365 aa13.97□□□□□ -0.17
SHMT2-226ENST00000556825 PRKD3O94806 890 aa13.97□□□□□ -0.17
SHMT2-226ENST00000556825 BPGMP07738 259 aa13.97□□□□□ -0.17
SHMT2-226ENST00000556825 CKMT2P17540 419 aa13.97□□□□□ -0.17
SHMT2-226ENST00000556825 IL10P22301 178 aa13.97□□□□□ -0.17
SHMT2-226ENST00000556825 RFC4P35249 363 aa13.97□□□□□ -0.17
SHMT2-226ENST00000556825 UGT2B10P36537 528 aa13.97□□□□□ -0.17
SHMT2-226ENST00000556825 GP5P40197 560 aa13.97□□□□□ -0.17
SHMT2-226ENST00000556825 MAPK12P53778 367 aa13.97□□□□□ -0.17
SHMT2-226ENST00000556825 ATXN3P54252 364 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-226ENST00000556825 DBPQ10586 325 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-226ENST00000556825 FBXO43Q4G163 708 aa13.97□□□□□ -0.17
SHMT2-226ENST00000556825 HABP4Q5JVS0 413 aaKnown RBP13.97□□□□□ -0.17
SHMT2-226ENST00000556825 GRTP1Q5TC63 336 aa13.97□□□□□ -0.17
SHMT2-226ENST00000556825 STEAP3Q658P3 488 aa13.97□□□□□ -0.17
SHMT2-226ENST00000556825 XAF1Q6GPH4 301 aa13.97□□□□□ -0.17
SHMT2-226ENST00000556825 HMBOX1Q6NT76 420 aa13.97□□□□□ -0.17
SHMT2-226ENST00000556825 KCNT2Q6UVM3 1135 aa13.97□□□□□ -0.17
SHMT2-226ENST00000556825 STXBP4Q6ZWJ1 553 aa13.97□□□□□ -0.17
SHMT2-226ENST00000556825 KIAA1958Q8N8K9 716 aa13.97□□□□□ -0.17
SHMT2-226ENST00000556825 ZNF564Q8TBZ8 553 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-226ENST00000556825 PHF10Q8WUB8 498 aaKnown RBP13.97□□□□□ -0.17
SHMT2-226ENST00000556825 ZNF594Q96JF6 807 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-226ENST00000556825 FUNDC2Q9BWH2 189 aa13.97□□□□□ -0.17
SHMT2-226ENST00000556825 CHORDC1Q9UHD1 332 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-226ENST00000556825 RNF112Q9ULX5 631 aa13.97□□□□□ -0.17
SHMT2-226ENST00000556825 NIP7Q9Y221 180 aaKnown RBP eCLIP13.97□□□□□ -0.17
SHMT2-226ENST00000556825 PCDHA2Q9Y5H9 948 aa13.97□□□□□ -0.17
SHMT2-226ENST00000556825 SYNCRIPO60506 623 aaKnown RBP13.96□□□□□ -0.17
SHMT2-226ENST00000556825 MAFO75444 373 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-226ENST00000556825 DNAJB5O75953 348 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 TMEM191BP0C7N4 346 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 MTHFD1P11586 935 aaKnown RBP13.96□□□□□ -0.17
SHMT2-226ENST00000556825 BMP2P12643 396 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 FMO4P31512 558 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 SOX9P48436 509 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 KLF1Q13351 362 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-226ENST00000556825 CCNYL2Q5T2Q4 361 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 BROXQ5VW32 411 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 MAVSQ7Z434 540 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 LRRTM3Q86VH5 581 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 CAMK1DQ8IU85 385 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 CDH26Q8IXH8 852 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 PGAM4Q8N0Y7 254 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 ZSCAN18Q8TBC5 510 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-226ENST00000556825 TESCQ96BS2 214 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 DUS3LQ96G46 650 aaKnown RBP13.96□□□□□ -0.17
SHMT2-226ENST00000556825 SLC6A17Q9H1V8 727 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 LRRC40Q9H9A6 602 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 ZNF556Q9HAH1 456 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 SPC25Q9HBM1 224 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 NGRNQ9NPE2 291 aaKnown RBP13.96□□□□□ -0.17
SHMT2-226ENST00000556825 IFT80Q9P2H3 777 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-226ENST00000556825 SHOC2Q9UQ13 582 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 PRSS44E7EML9 344 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 PCSK2P16519 638 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 ITGA2P17301 1181 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 PTX3P26022 381 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-226ENST00000556825 ARHGDIBP52566 201 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 ERVK-21P61565 698 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 UBXN2AP68543 259 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 BNC1Q01954 994 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 MGAT3Q09327 533 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 ATF7IP2Q5U623 682 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 TMEM65Q6PI78 240 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 CHST15Q7LFX5 561 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-226ENST00000556825 NIPA1Q7RTP0 329 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 PTAR1Q7Z6K3 402 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-226ENST00000556825 ARHGEF19Q8IW93 802 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 CELF2-AS1Q8N7Q2 184 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 ARRDC4Q8NCT1 418 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 BEST2Q8NFU1 509 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 BRIP1Q9BX63 1249 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.96□□□□□ -0.176e-9■□□□□ 10.6
SHMT2-226ENST00000556825 C2orf40Q9H1Z8 148 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 SP110Q9HB58 689 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 INTS7Q9NVH2 962 aaKnown RBP13.96□□□□□ -0.17
SHMT2-226ENST00000556825 B3GNT2Q9NY97 397 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 TEKT2Q9UIF3 430 aa13.96□□□□□ -0.17
SHMT2-226ENST00000556825 KLF2Q9Y5W3 355 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-226ENST00000556825 A8MUA0 341 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 GPR25O00155 361 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 CYB561D2O14569 222 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 BANF1O75531 89 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 TSHRP16473 764 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 GLDCP23378 1020 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 LRPAP1P30533 357 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 SLC7A1P30825 629 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 SEPHS1P49903 392 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 IL1RL1Q01638 556 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 RHDQ02161 417 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 INCA1Q0VD86 236 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms