RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	TDRD6	O60522	2096 aa	Known RBP	12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	COL6A6	A6NMZ7	2263 aa		12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	CCDC187	A0A096LP49	1063 aa		12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	ILVBL	A1L0T0	632 aa		12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	BECN2	A8MW95	431 aa		12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	PPP1R3G	B7ZBB8	358 aa		12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	NEMP1	O14524	444 aa		12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	EFS	O43281	561 aa		12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	TSPAN6	O43657	245 aa		12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	DAB1	O75553	588 aa		12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	ERBB2	P04626	1255 aa		12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	ITGA2B	P08514	1039 aa		12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	KRT10	P13645	584 aa		12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	SERPINH1	P50454	418 aa	Known RBP	12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	CSRP3	P50461	194 aa		12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	ADK	P55263	362 aa	Known RBP	12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	MARS	P56192	900 aa	Known RBP	12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	RNASE9	P60153	205 aa	Known RBP	12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	PRRT3	Q5FWE3	981 aa		12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	ESRP1	Q6NXG1	681 aa	Known RBP	12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	GJB7	Q6PEY0	223 aa		12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	XKR5	Q6UX68	686 aa		12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	ZNF783	Q6ZMS7	281 aa		12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	PCDH20	Q8N6Y1	951 aa	Known RBP	12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	ZNF397	Q8NF99	534 aa	Predicted RBP	12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	OR7D4	Q8NG98	312 aa		12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	RAB7B	Q96AH8	199 aa		12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	TIGD1	Q96MW7	591 aa		12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	FAM117A	Q9C073	453 aa		12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	SYNC	Q9H7C4	482 aa		12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	ANLN	Q9NQW6	1124 aa		12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	WDR70	Q9NW82	654 aa		12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	TMEM51	Q9NW97	253 aa		12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	FASTKD2	Q9NYY8	710 aa	Known RBP eCLIP	12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	PAXBP1	Q9Y5B6	917 aa		12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	HEMK1	Q9Y5R4	338 aa	Predicted RBP	12.89	□□□□□ -0.35
SHMT2-223	ENST00000556689	IGLV3-10	A0A075B6K4	115 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	PMS2P1	A4D2B8	440 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	LMO7DN	F2Z398	122 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689		I6L893	689 aa	Predicted RBP	12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	SRGAP2	O75044	1071 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	GCAT	O75600	419 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	ZMPSTE24	O75844	475 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	GJB6	O95452	261 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	ANXA6	P08133	673 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	TFE3	P19532	575 aa	Predicted RBP	12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	KRT9	P35527	623 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	CCNH	P51946	323 aa	Predicted RBP	12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	THOP1	P52888	689 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	PTK2	Q05397	1052 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	DEUP1	Q05D60	604 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	NFATC3	Q12968	1075 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	C1orf61	Q13536	156 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	SPIDR	Q14159	915 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	DRAP1	Q14919	205 aa	Predicted RBP	12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	TPRG1L	Q5T0D9	272 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	C6orf132	Q5T0Z8	1188 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	FAXC	Q5TGI0	409 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	PARS2	Q7L3T8	475 aa	Known RBP	12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	ZDHHC17	Q8IUH5	632 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	PLPP6	Q8IY26	295 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	SLC35F3	Q8IY50	421 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	RBFA	Q8N0V3	343 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	EXD3	Q8N9H8	876 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	C1orf131	Q8NDD1	294 aa	Known RBP	12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	DENND6B	Q8NEG7	585 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	PGAP3	Q96FM1	320 aa	Predicted RBP	12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	TBATA	Q96M53	351 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	CCDC3	Q9BQI4	270 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	CRACR2A	Q9BSW2	395 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	SLC13A1	Q9BZW2	595 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	TCEAL2	Q9H3H9	227 aa	Predicted RBP	12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	ATP13A1	Q9HD20	1204 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	HECA	Q9UBI9	543 aa	Predicted RBP	12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	APOBEC3B	Q9UH17	382 aa	Known RBP	12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	IL17B	Q9UHF5	180 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	STAP1	Q9ULZ2	295 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	PADI4	Q9UM07	663 aa		12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	NYNRIN	Q9P2P1	1898 aa	Known RBP	12.88	□□□□□ -0.35
SHMT2-223	ENST00000556689	C16orf96	A6NNT2	1141 aa		12.87	□□□□□ -0.35
SHMT2-223	ENST00000556689	YY2	O15391	372 aa		12.87	□□□□□ -0.35
SHMT2-223	ENST00000556689	FGFR1OP	O95684	399 aa	Known RBP	12.87	□□□□□ -0.35
SHMT2-223	ENST00000556689	SLC9A1	P19634	815 aa		12.87	□□□□□ -0.35
SHMT2-223	ENST00000556689	SULT1E1	P49888	294 aa		12.87	□□□□□ -0.35
SHMT2-223	ENST00000556689	STX17	P56962	302 aa		12.87	□□□□□ -0.35
SHMT2-223	ENST00000556689	YPEL5	P62699	121 aa		12.87	□□□□□ -0.35
SHMT2-223	ENST00000556689	PTPN20	Q4JDL3	420 aa		12.87	□□□□□ -0.35
SHMT2-223	ENST00000556689	ZNF805	Q5CZA5	627 aa		12.87	□□□□□ -0.35
SHMT2-223	ENST00000556689	OTUD1	Q5VV17	481 aa	Predicted RBP	12.87	□□□□□ -0.35
SHMT2-223	ENST00000556689	TRIM65	Q6PJ69	517 aa		12.87	□□□□□ -0.35
SHMT2-223	ENST00000556689	USP53	Q70EK8	1073 aa		12.87	□□□□□ -0.35
SHMT2-223	ENST00000556689	ELOA2	Q8IYF1	753 aa	Predicted RBP	12.87	□□□□□ -0.35
SHMT2-223	ENST00000556689	PHACTR4	Q8IZ21	702 aa		12.87	□□□□□ -0.35
SHMT2-223	ENST00000556689	RYBP	Q8N488	228 aa	Predicted RBP	12.87	□□□□□ -0.35
SHMT2-223	ENST00000556689	FBXO39	Q8N4B4	442 aa		12.87	□□□□□ -0.35
SHMT2-223	ENST00000556689	NT5C3B	Q969T7	300 aa		12.87	□□□□□ -0.35
SHMT2-223	ENST00000556689	ISG20	Q96AZ6	181 aa	Known RBP	12.87	□□□□□ -0.35
SHMT2-223	ENST00000556689	CENPT	Q96BT3	561 aa		12.87	□□□□□ -0.35
SHMT2-223	ENST00000556689	HAPLN3	Q96S86	360 aa		12.87	□□□□□ -0.35

Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms