RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 PKN3Q6P5Z2 889 aa16■□□□□ 0.15
LDLR-204ENST00000545707 PAOXQ6QHF9 649 aa16■□□□□ 0.15
LDLR-204ENST00000545707 PCDH20Q8N6Y1 951 aaKnown RBP16■□□□□ 0.15
LDLR-204ENST00000545707 KDM1BQ8NB78 822 aa16■□□□□ 0.15
LDLR-204ENST00000545707 TXNDC5Q8NBS9 432 aaKnown RBP16■□□□□ 0.15
LDLR-204ENST00000545707 NMD3Q96D46 503 aaKnown RBP16■□□□□ 0.15
LDLR-204ENST00000545707 ELMO2Q96JJ3 720 aa16■□□□□ 0.15
LDLR-204ENST00000545707 CNBD2Q96M20 576 aa16■□□□□ 0.15
LDLR-204ENST00000545707 KLHL32Q96NJ5 620 aa16■□□□□ 0.15
LDLR-204ENST00000545707 PKP2Q99959 881 aa16■□□□□ 0.15
LDLR-204ENST00000545707 ZNF385DQ9H6B1 395 aa16■□□□□ 0.15
LDLR-204ENST00000545707 TNFRSF12AQ9NP84 129 aa16■□□□□ 0.15
LDLR-204ENST00000545707 CHST12Q9NRB3 414 aa16■□□□□ 0.15
LDLR-204ENST00000545707 GTSE1Q9NYZ3 720 aa16■□□□□ 0.15
LDLR-204ENST00000545707 APPL1Q9UKG1 709 aa16■□□□□ 0.15
LDLR-204ENST00000545707 PRPF19Q9UMS4 504 aaKnown RBP16■□□□□ 0.15
LDLR-204ENST00000545707 TLL2Q9Y6L7 1015 aa16■□□□□ 0.15
LDLR-204ENST00000545707 CASTOR2A6NHX0 329 aa16■□□□□ 0.15
LDLR-204ENST00000545707 MTSS1O43312 755 aa16■□□□□ 0.15
LDLR-204ENST00000545707 STRNO43815 780 aa16■□□□□ 0.15
LDLR-204ENST00000545707 LRPAP1P30533 357 aa16■□□□□ 0.15
LDLR-204ENST00000545707 SLC1A2P43004 574 aa16■□□□□ 0.15
LDLR-204ENST00000545707 CXCR3P49682 368 aa16■□□□□ 0.15
LDLR-204ENST00000545707 RAB10P61026 200 aa16■□□□□ 0.15
LDLR-204ENST00000545707 XIAPP98170 497 aa16■□□□□ 0.15
LDLR-204ENST00000545707 CDC42EP1Q00587 391 aa16■□□□□ 0.15
LDLR-204ENST00000545707 ZNF789Q5FWF6 425 aa16■□□□□ 0.15
LDLR-204ENST00000545707 IQSEC1Q6DN90 963 aa16■□□□□ 0.15
LDLR-204ENST00000545707 DENND5AQ6IQ26 1287 aa16■□□□□ 0.15
LDLR-204ENST00000545707 CNSTQ6PJW8 725 aa16■□□□□ 0.15
LDLR-204ENST00000545707 HEXDCQ8WVB3 486 aa16■□□□□ 0.15
LDLR-204ENST00000545707 NDNQ99608 321 aa16■□□□□ 0.15
LDLR-204ENST00000545707 TBL1YQ9BQ87 522 aa16■□□□□ 0.15
LDLR-204ENST00000545707 ZBTB26Q9HCK0 441 aa16■□□□□ 0.15
LDLR-204ENST00000545707 NUDT5Q9UKK9 219 aa16■□□□□ 0.15
LDLR-204ENST00000545707 ANKRD6Q9Y2G4 727 aa16■□□□□ 0.15
LDLR-204ENST00000545707 TSC2P49815 1807 aa16■□□□□ 0.15
LDLR-204ENST00000545707 TCAF2A6NFQ2 919 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 KCNU1A8MYU2 1149 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 PEX1O43933 1283 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 CRTAMO95727 393 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 APOA4P06727 396 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 STMN1P16949 149 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 BDNFP23560 247 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 PLK1P53350 603 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 SEPT6Q14141 434 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 RAB41Q5JT25 222 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 PCID2Q5JVF3 399 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 C6orf52Q5T4I8 152 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 IYDQ6PHW0 289 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 ARHGAP18Q8N392 663 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 CPSF7Q8N684 471 aaKnown RBP15.99■□□□□ 0.15
LDLR-204ENST00000545707 SCAMP5Q8TAC9 235 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 C6orf203Q9P0P8 240 aaPredicted RBP15.99■□□□□ 0.15
LDLR-204ENST00000545707 MID2Q9UJV3 735 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 RAD54BQ9Y620 910 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 TRIP12Q14669 1992 aaPredicted RBP15.99■□□□□ 0.15
LDLR-204ENST00000545707 MT-CO1P00395 513 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 MYL3P08590 195 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 SMIM18P0DKX4 95 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 ATP6V1B1P15313 513 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 KCNA5P22460 613 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 ARCN1P48444 511 aaKnown RBP15.99■□□□□ 0.15
LDLR-204ENST00000545707 AIF1P55008 147 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 ADAM17P78536 824 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 CDKL1Q00532 357 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 BIRC2Q13490 618 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 ADGRE1Q14246 886 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 RBM20Q5T481 1227 aaKnown RBP15.99■□□□□ 0.15
LDLR-204ENST00000545707 OLFML2BQ68BL8 750 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 ZNF470Q6ECI4 717 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 ZNF467Q7Z7K2 595 aaPredicted RBP15.99■□□□□ 0.15
LDLR-204ENST00000545707 SPATA24Q86W54 205 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 RDH11Q8TC12 318 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 NAT14Q8WUY8 206 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 BTBD9Q96Q07 612 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 PCDHAC1Q9H158 963 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 OSBPL2Q9H1P3 480 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 POMKQ9H5K3 350 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 ADA2Q9NZK5 511 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 RIMS3Q9UJD0 308 aa15.99■□□□□ 0.15
LDLR-204ENST00000545707 CCL15-CCL14A0A0B4J2E2 113 aa15.98■□□□□ 0.15
LDLR-204ENST00000545707 PABPC4LP0CB38 370 aaKnown RBP15.98■□□□□ 0.15
LDLR-204ENST00000545707 ME2P23368 584 aa15.98■□□□□ 0.15
LDLR-204ENST00000545707 PGFP49763 221 aa15.98■□□□□ 0.15
LDLR-204ENST00000545707 CSHL1Q14406 222 aa15.98■□□□□ 0.15
LDLR-204ENST00000545707 PCSK7Q16549 785 aa15.98■□□□□ 0.15
LDLR-204ENST00000545707 CCL15Q16663 113 aa15.98■□□□□ 0.15
LDLR-204ENST00000545707 INTS6LQ5JSJ4 861 aaKnown RBP15.98■□□□□ 0.15
LDLR-204ENST00000545707 IL31Q6EBC2 164 aa15.98■□□□□ 0.15
LDLR-204ENST00000545707 PGAM4Q8N0Y7 254 aa15.98■□□□□ 0.15
LDLR-204ENST00000545707 PGAP3Q96FM1 320 aaPredicted RBP15.98■□□□□ 0.15
LDLR-204ENST00000545707 VAT1Q99536 393 aa15.98■□□□□ 0.15
LDLR-204ENST00000545707 BRD8Q9H0E9 1235 aa15.98■□□□□ 0.15
LDLR-204ENST00000545707 TRPV6Q9H1D0 765 aa15.98■□□□□ 0.15
LDLR-204ENST00000545707 EFCAB1Q9HAE3 211 aa15.98■□□□□ 0.15
LDLR-204ENST00000545707 AP4B1Q9Y6B7 739 aa15.98■□□□□ 0.15
LDLR-204ENST00000545707 SDHDO14521 159 aa15.98■□□□□ 0.15
LDLR-204ENST00000545707 MSI1O43347 362 aaKnown RBP15.98■□□□□ 0.15
LDLR-204ENST00000545707 PIM1P11309 404 aaPredicted RBP15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms