RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 PHLDB2Q86SQ0 1253 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 OR13H1Q8NG92 308 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 OR2AP1Q8NGE2 309 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 OR4C6Q8NH72 309 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 JOSD2Q8TAC2 188 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 ARHGEF2Q92974 986 aaKnown RBP13.35□□□□□ -0.27
RTN3-213ENST00000543552 ERGIC2Q96RQ1 377 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 EPAS1Q99814 870 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 SLC17A9Q9BYT1 436 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 TM6SF2Q9BZW4 377 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 FZD3Q9NPG1 666 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 RALYQ9UKM9 306 aaKnown RBP13.35□□□□□ -0.27
RTN3-213ENST00000543552 CA5BQ9Y2D0 317 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 FADS3Q9Y5Q0 445 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 HS3ST3A1Q9Y663 406 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 LRRC10BA6NIK2 292 aa13.34□□□□□ -0.27
RTN3-213ENST00000543552 SIGLEC16A6NMB1 481 aa13.34□□□□□ -0.27
RTN3-213ENST00000543552 KRIT1O00522 736 aa13.34□□□□□ -0.27
RTN3-213ENST00000543552 FPGTO14772 594 aa13.34□□□□□ -0.27
RTN3-213ENST00000543552 POP4O95707 220 aaKnown RBP13.34□□□□□ -0.27
RTN3-213ENST00000543552 FERP16591 822 aa13.34□□□□□ -0.27
RTN3-213ENST00000543552 DGKAP23743 735 aa13.34□□□□□ -0.27
RTN3-213ENST00000543552 EPHB2P29323 1055 aa13.34□□□□□ -0.27
RTN3-213ENST00000543552 HTR7P34969 479 aa13.34□□□□□ -0.27
RTN3-213ENST00000543552 RABIFP47224 123 aa13.34□□□□□ -0.27
RTN3-213ENST00000543552 ZNF143P52747 638 aaPredicted RBP13.34□□□□□ -0.27
RTN3-213ENST00000543552 PTP4A2Q12974 167 aa13.34□□□□□ -0.27
RTN3-213ENST00000543552 PROX2Q3B8N5 592 aa13.34□□□□□ -0.27
RTN3-213ENST00000543552 PARP15Q460N3 678 aa13.34□□□□□ -0.27
RTN3-213ENST00000543552 GCNT7Q6ZNI0 430 aa13.34□□□□□ -0.27
RTN3-213ENST00000543552 Q6ZSR6 202 aa13.34□□□□□ -0.27
RTN3-213ENST00000543552 MON1BQ7L1V2 547 aa13.34□□□□□ -0.27
RTN3-213ENST00000543552 PARS2Q7L3T8 475 aaKnown RBP13.34□□□□□ -0.27
RTN3-213ENST00000543552 CACTIN-AS1Q8N1I8 211 aa13.34□□□□□ -0.27
RTN3-213ENST00000543552 CCDC185Q8N715 623 aa13.34□□□□□ -0.27
RTN3-213ENST00000543552 RTL3Q8N8U3 475 aaKnown RBP13.34□□□□□ -0.27
RTN3-213ENST00000543552 DENND6BQ8NEG7 585 aa13.34□□□□□ -0.27
RTN3-213ENST00000543552 GDAP1L1Q96MZ0 367 aa13.34□□□□□ -0.27
RTN3-213ENST00000543552 CNPY3Q9BT09 278 aa13.34□□□□□ -0.27
RTN3-213ENST00000543552 DUSP23Q9BVJ7 150 aa13.34□□□□□ -0.27
RTN3-213ENST00000543552 C1QTNF7Q9BXJ2 289 aa13.34□□□□□ -0.27
RTN3-213ENST00000543552 CATSPERBQ9H7T0 1116 aa13.34□□□□□ -0.27
RTN3-213ENST00000543552 USP29Q9HBJ7 922 aa13.34□□□□□ -0.27
RTN3-213ENST00000543552 NCKIPSDQ9NZQ3 722 aa13.34□□□□□ -0.27
RTN3-213ENST00000543552 IPO11Q9UI26 975 aaKnown RBP13.34□□□□□ -0.27
RTN3-213ENST00000543552 ZFR2Q9UPR6 939 aaKnown RBP13.34□□□□□ -0.27
RTN3-213ENST00000543552 C16orf96A6NNT2 1141 aa13.33□□□□□ -0.28
RTN3-213ENST00000543552 FAM72CH0Y354 149 aa13.33□□□□□ -0.28
RTN3-213ENST00000543552 FGF10O15520 208 aaPredicted RBP13.33□□□□□ -0.28
RTN3-213ENST00000543552 BUB1O43683 1085 aa13.33□□□□□ -0.28
RTN3-213ENST00000543552 SIGLEC6O43699 453 aa13.33□□□□□ -0.28
RTN3-213ENST00000543552 KDELR3O43731 214 aa13.33□□□□□ -0.28
RTN3-213ENST00000543552 PIAS2O75928 621 aa13.33□□□□□ -0.28
RTN3-213ENST00000543552 IGSF6O95976 241 aa13.33□□□□□ -0.28
RTN3-213ENST00000543552 DUSP3P51452 185 aaPredicted RBP13.33□□□□□ -0.28
RTN3-213ENST00000543552 CLDN2P57739 230 aa13.33□□□□□ -0.28
RTN3-213ENST00000543552 YBEYP58557 167 aaPredicted RBP13.33□□□□□ -0.28
RTN3-213ENST00000543552 TARDBPQ13148 414 aaKnown RBP eCLIP13.33□□□□□ -0.28
RTN3-213ENST00000543552 INO80DQ53TQ3 878 aaPredicted RBP13.33□□□□□ -0.28
RTN3-213ENST00000543552 CCDC183Q5T5S1 534 aa13.33□□□□□ -0.28
RTN3-213ENST00000543552 FAM72AQ5TYM5 149 aa13.33□□□□□ -0.28
RTN3-213ENST00000543552 FAM72DQ6L9T8 149 aa13.33□□□□□ -0.28
RTN3-213ENST00000543552 SCYL2Q6P3W7 929 aa13.33□□□□□ -0.28
RTN3-213ENST00000543552 DCUN1D2Q6PH85 259 aa13.33□□□□□ -0.28
RTN3-213ENST00000543552 WDR59Q6PJI9 974 aa13.33□□□□□ -0.28
RTN3-213ENST00000543552 PARGQ86W56 976 aa13.33□□□□□ -0.28
RTN3-213ENST00000543552 FAM72BQ86X60 149 aa13.33□□□□□ -0.28
RTN3-213ENST00000543552 MARCH9Q86YJ5 346 aa13.33□□□□□ -0.28
RTN3-213ENST00000543552 ASB12Q8WXK4 309 aa13.33□□□□□ -0.28
RTN3-213ENST00000543552 RFFLQ8WZ73 363 aa13.33□□□□□ -0.28
RTN3-213ENST00000543552 MCEEQ96PE7 176 aa13.33□□□□□ -0.28
RTN3-213ENST00000543552 LENG8Q96PV6 779 aaPredicted RBP13.33□□□□□ -0.28
RTN3-213ENST00000543552 PCDHB18PQ96TA0 734 aa13.33□□□□□ -0.28
RTN3-213ENST00000543552 AGPAT1Q99943 283 aa13.33□□□□□ -0.28
RTN3-213ENST00000543552 NRSN2Q9GZP1 204 aa13.33□□□□□ -0.28
RTN3-213ENST00000543552 NDFIP2Q9NV92 336 aa13.33□□□□□ -0.28
RTN3-213ENST00000543552 DNAJC28Q9NX36 388 aa13.33□□□□□ -0.28
RTN3-213ENST00000543552 NLGN3Q9NZ94 848 aa13.33□□□□□ -0.28
RTN3-213ENST00000543552 MYO6Q9UM54 1294 aa13.33□□□□□ -0.28
RTN3-213ENST00000543552 NEU3Q9UQ49 428 aa13.33□□□□□ -0.28
RTN3-213ENST00000543552 CLCA2Q9UQC9 943 aa13.33□□□□□ -0.28
RTN3-213ENST00000543552 KNTC1P50748 2209 aa13.33□□□□□ -0.28
RTN3-213ENST00000543552 TRPM6Q9BX84 2022 aa13.32□□□□□ -0.28
RTN3-213ENST00000543552 ATRXP46100 2492 aa13.32□□□□□ -0.28
RTN3-213ENST00000543552 A0A087WV48 116 aa13.32□□□□□ -0.28
RTN3-213ENST00000543552 TRIM38O00635 465 aa13.32□□□□□ -0.28
RTN3-213ENST00000543552 FFAR2O15552 330 aa13.32□□□□□ -0.28
RTN3-213ENST00000543552 CCP110O43303 1012 aa13.32□□□□□ -0.28
RTN3-213ENST00000543552 TMCC1O94876 653 aa13.32□□□□□ -0.28
RTN3-213ENST00000543552 GJB6O95452 261 aa13.32□□□□□ -0.28
RTN3-213ENST00000543552 PAK4O96013 591 aaPredicted RBP13.32□□□□□ -0.28
RTN3-213ENST00000543552 UGT2B4P06133 528 aa13.32□□□□□ -0.28
RTN3-213ENST00000543552 SUOXP51687 545 aa13.32□□□□□ -0.28
RTN3-213ENST00000543552 COL28A1Q2UY09 1125 aa13.32□□□□□ -0.28
RTN3-213ENST00000543552 MYLK3Q32MK0 819 aa13.32□□□□□ -0.28
RTN3-213ENST00000543552 RAB6CQ53S08 254 aa13.32□□□□□ -0.28
RTN3-213ENST00000543552 C19orf48Q6RUI8 117 aa13.32□□□□□ -0.28
RTN3-213ENST00000543552 GDPD4Q6W3E5 623 aa13.32□□□□□ -0.28
RTN3-213ENST00000543552 SLC22A18ASQ8N1D0 253 aa13.32□□□□□ -0.28
RTN3-213ENST00000543552 SLC25A45Q8N413 288 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms