RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 NR0B2Q15466 257 aa18.15■□□□□ 0.5
CLSTN3-214ENST00000542663 ARHGAP44Q17R89 818 aa18.15■□□□□ 0.5
CLSTN3-214ENST00000542663 PTPN20Q4JDL3 420 aa18.15■□□□□ 0.5
CLSTN3-214ENST00000542663 BRMS1LQ5PSV4 323 aa18.15■□□□□ 0.5
CLSTN3-214ENST00000542663 FOXR1Q6PIV2 292 aa18.15■□□□□ 0.5
CLSTN3-214ENST00000542663 SLC35F3Q8IY50 421 aa18.15■□□□□ 0.5
CLSTN3-214ENST00000542663 TPCN2Q8NHX9 752 aa18.15■□□□□ 0.5
CLSTN3-214ENST00000542663 WDR36Q8NI36 951 aaKnown RBP18.15■□□□□ 0.5
CLSTN3-214ENST00000542663 NT5C3BQ969T7 300 aa18.15■□□□□ 0.5
CLSTN3-214ENST00000542663 VOPP1Q96AW1 172 aa18.15■□□□□ 0.5
CLSTN3-214ENST00000542663 TIGD1Q96MW7 591 aa18.15■□□□□ 0.5
CLSTN3-214ENST00000542663 IL12RB2Q99665 862 aa18.15■□□□□ 0.5
CLSTN3-214ENST00000542663 HEPHQ9BQS7 1158 aa18.15■□□□□ 0.5
CLSTN3-214ENST00000542663 CRACR2AQ9BSW2 395 aa18.15■□□□□ 0.5
CLSTN3-214ENST00000542663 IPO11Q9UI26 975 aaKnown RBP18.15■□□□□ 0.5
CLSTN3-214ENST00000542663 ACTL7AQ9Y615 435 aa18.15■□□□□ 0.5
CLSTN3-214ENST00000542663 UNC13CQ8NB66 2214 aa18.15■□□□□ 0.5
CLSTN3-214ENST00000542663 IGLON5A6NGN9 336 aa18.14■□□□□ 0.49
CLSTN3-214ENST00000542663 FPGTO14772 594 aa18.14■□□□□ 0.49
CLSTN3-214ENST00000542663 MUSKO15146 869 aa18.14■□□□□ 0.49
CLSTN3-214ENST00000542663 EFSO43281 561 aa18.14■□□□□ 0.49
CLSTN3-214ENST00000542663 TNFSF15O95150 251 aa18.14■□□□□ 0.49
CLSTN3-214ENST00000542663 WISP1O95388 367 aa18.14■□□□□ 0.49
CLSTN3-214ENST00000542663 CD160O95971 181 aa18.14■□□□□ 0.49
CLSTN3-214ENST00000542663 SLC9A1P19634 815 aa18.14■□□□□ 0.49
CLSTN3-214ENST00000542663 OR1E1P30953 314 aa18.14■□□□□ 0.49
CLSTN3-214ENST00000542663 USP8P40818 1118 aa18.14■□□□□ 0.49
CLSTN3-214ENST00000542663 ABL2P42684 1182 aa18.14■□□□□ 0.49
CLSTN3-214ENST00000542663 CCNHP51946 323 aaPredicted RBP18.14■□□□□ 0.49
CLSTN3-214ENST00000542663 STX17P56962 302 aa18.14■□□□□ 0.49
CLSTN3-214ENST00000542663 ARF5P84085 180 aa18.14■□□□□ 0.49
CLSTN3-214ENST00000542663 ARL13BQ3SXY8 428 aa18.14■□□□□ 0.49
CLSTN3-214ENST00000542663 ARL14Q8N4G2 192 aa18.14■□□□□ 0.49
CLSTN3-214ENST00000542663 EXD3Q8N9H8 876 aa18.14■□□□□ 0.49
CLSTN3-214ENST00000542663 SHC3Q92529 594 aa18.14■□□□□ 0.49
CLSTN3-214ENST00000542663 PGAP3Q96FM1 320 aaPredicted RBP18.14■□□□□ 0.49
CLSTN3-214ENST00000542663 C1orf74Q96LT6 269 aa18.14■□□□□ 0.49
CLSTN3-214ENST00000542663 CEP44Q9C0F1 390 aa18.14■□□□□ 0.49
CLSTN3-214ENST00000542663 UBR5O95071 2799 aaPredicted RBP18.14■□□□□ 0.49
CLSTN3-214ENST00000542663 BICDL2A1A5D9 508 aa18.13■□□□□ 0.49
CLSTN3-214ENST00000542663 ILVBLA1L0T0 632 aa18.13■□□□□ 0.49
CLSTN3-214ENST00000542663 ARHGAP6O43182 974 aa18.13■□□□□ 0.49
CLSTN3-214ENST00000542663 GNA14O95837 355 aa18.13■□□□□ 0.49
CLSTN3-214ENST00000542663 MLLT3P42568 568 aaPredicted RBP18.13■□□□□ 0.49
CLSTN3-214ENST00000542663 SULT1E1P49888 294 aa18.13■□□□□ 0.49
CLSTN3-214ENST00000542663 C1orf61Q13536 156 aa18.13■□□□□ 0.49
CLSTN3-214ENST00000542663 ZSCAN23Q3MJ62 389 aa18.13■□□□□ 0.49
CLSTN3-214ENST00000542663 CARD16Q5EG05 197 aa18.13■□□□□ 0.49
CLSTN3-214ENST00000542663 C6orf132Q5T0Z8 1188 aa18.13■□□□□ 0.49
CLSTN3-214ENST00000542663 PCDH20Q8N6Y1 951 aaKnown RBP18.13■□□□□ 0.49
CLSTN3-214ENST00000542663 TBCBQ99426 244 aa18.13■□□□□ 0.49
CLSTN3-214ENST00000542663 CCDC3Q9BQI4 270 aa18.13■□□□□ 0.49
CLSTN3-214ENST00000542663 LRRC61Q9BV99 259 aa18.13■□□□□ 0.49
CLSTN3-214ENST00000542663 SRRTQ9BXP5 876 aaKnown RBP18.13■□□□□ 0.49
CLSTN3-214ENST00000542663 ZDHHC6Q9H6R6 413 aa18.13■□□□□ 0.49
CLSTN3-214ENST00000542663 RRN3Q9NYV6 651 aa18.13■□□□□ 0.49
CLSTN3-214ENST00000542663 AJAP1Q9UKB5 411 aaPredicted RBP18.13■□□□□ 0.49
CLSTN3-214ENST00000542663 ITM2BQ9Y287 266 aa18.13■□□□□ 0.49
CLSTN3-214ENST00000542663 FCF1Q9Y324 198 aaKnown RBP18.13■□□□□ 0.49
CLSTN3-214ENST00000542663 COL12A1Q99715 3063 aa18.13■□□□□ 0.49
CLSTN3-214ENST00000542663 CCDC187A0A096LP49 1063 aa18.12■□□□□ 0.49
CLSTN3-214ENST00000542663 ITGA2BP08514 1039 aa18.12■□□□□ 0.49
CLSTN3-214ENST00000542663 DNA2P51530 1060 aa18.12■□□□□ 0.49
CLSTN3-214ENST00000542663 ADKP55263 362 aaKnown RBP18.12■□□□□ 0.49
CLSTN3-214ENST00000542663 SGCGQ13326 291 aa18.12■□□□□ 0.49
CLSTN3-214ENST00000542663 MORC3Q14149 939 aa18.12■□□□□ 0.49
CLSTN3-214ENST00000542663 PRRT3Q5FWE3 981 aa18.12■□□□□ 0.49
CLSTN3-214ENST00000542663 RETSATQ6NUM9 610 aa18.12■□□□□ 0.49
CLSTN3-214ENST00000542663 LRRC31Q6UY01 552 aa18.12■□□□□ 0.49
CLSTN3-214ENST00000542663 ZSCAN30Q86W11 494 aa18.12■□□□□ 0.49
CLSTN3-214ENST00000542663 DENND6BQ8NEG7 585 aa18.12■□□□□ 0.49
CLSTN3-214ENST00000542663 BTN2A2Q8WVV5 523 aa18.12■□□□□ 0.49
CLSTN3-214ENST00000542663 ASB12Q8WXK4 309 aa18.12■□□□□ 0.49
CLSTN3-214ENST00000542663 CENPTQ96BT3 561 aa18.12■□□□□ 0.49
CLSTN3-214ENST00000542663 CCNL2Q96S94 520 aaPredicted RBP18.12■□□□□ 0.49
CLSTN3-214ENST00000542663 SPON2Q9BUD6 331 aa18.12■□□□□ 0.49
CLSTN3-214ENST00000542663 CLPBQ9H078 707 aa18.12■□□□□ 0.49
CLSTN3-214ENST00000542663 ATP13A1Q9HD20 1204 aa18.12■□□□□ 0.49
CLSTN3-214ENST00000542663 PLCB1Q9NQ66 1216 aa18.12■□□□□ 0.49
CLSTN3-214ENST00000542663 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP18.12■□□□□ 0.49
CLSTN3-214ENST00000542663 SPASTQ9UBP0 616 aa18.12■□□□□ 0.49
CLSTN3-214ENST00000542663 APEX2Q9UBZ4 518 aa18.12■□□□□ 0.49
CLSTN3-214ENST00000542663 APOBEC3BQ9UH17 382 aaKnown RBP18.12■□□□□ 0.49
CLSTN3-214ENST00000542663 HOOK1Q9UJC3 728 aaKnown RBP18.12■□□□□ 0.49
CLSTN3-214ENST00000542663 PTPN13Q12923 2485 aa18.11■□□□□ 0.49
CLSTN3-214ENST00000542663 C16orf96A6NNT2 1141 aa18.11■□□□□ 0.49
CLSTN3-214ENST00000542663 LMO7DNF2Z398 122 aa18.11■□□□□ 0.49
CLSTN3-214ENST00000542663 NTN3O00634 580 aaPredicted RBP18.11■□□□□ 0.49
CLSTN3-214ENST00000542663 TSPAN6O43657 245 aa18.11■□□□□ 0.49
CLSTN3-214ENST00000542663 GKP32189 559 aa18.11■□□□□ 0.49
CLSTN3-214ENST00000542663 CLCN1P35523 988 aa18.11■□□□□ 0.49
CLSTN3-214ENST00000542663 IGFALSP35858 605 aa18.11■□□□□ 0.49
CLSTN3-214ENST00000542663 RNASE9P60153 205 aaKnown RBP18.11■□□□□ 0.49
CLSTN3-214ENST00000542663 DEUP1Q05D60 604 aa18.11■□□□□ 0.49
CLSTN3-214ENST00000542663 SLC20A2Q08357 652 aa18.11■□□□□ 0.49
CLSTN3-214ENST00000542663 SPIDRQ14159 915 aa18.11■□□□□ 0.49
CLSTN3-214ENST00000542663 LINC00303Q3SY05 128 aa18.11■□□□□ 0.49
CLSTN3-214ENST00000542663 ZNF783Q6ZMS7 281 aa18.11■□□□□ 0.49
CLSTN3-214ENST00000542663 PRICKLE2Q7Z3G6 844 aa18.11■□□□□ 0.49
CLSTN3-214ENST00000542663 PHACTR4Q8IZ21 702 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms