RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 BGNP21810 368 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 ARFIP2P53365 341 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 ELAVL2Q12926 359 aaKnown RBP10.91□□□□□ -0.66
CLIP1-210ENST00000538120 RCN2Q14257 317 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 TRIP4Q15650 581 aaPredicted RBP10.91□□□□□ -0.66
CLIP1-210ENST00000538120 SMAD1Q15797 465 aaKnown RBP10.91□□□□□ -0.66
CLIP1-210ENST00000538120 PSMD5Q16401 504 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 ANKS3Q6ZW76 656 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 DEFB128Q7Z7B8 93 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 CHSY1Q86X52 802 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 FBXO27Q8NI29 283 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 FCRL5Q96RD9 977 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 TSSK1BQ9BXA7 367 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 TMEM120AQ9BXJ8 343 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 RNF208Q9H0X6 261 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 CWH43Q9H720 699 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 LRRC40Q9H9A6 602 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 GLOD4Q9HC38 313 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 BFARQ9NZS9 450 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 WASF2Q9Y6W5 498 aa10.91□□□□□ -0.66
CLIP1-210ENST00000538120 IGLV3-10A0A075B6K4 115 aa10.9□□□□□ -0.66
CLIP1-210ENST00000538120 POLBP06746 335 aa10.9□□□□□ -0.66
CLIP1-210ENST00000538120 SLC2A3P11169 496 aa10.9□□□□□ -0.66
CLIP1-210ENST00000538120 TPH1P17752 444 aa10.9□□□□□ -0.66
CLIP1-210ENST00000538120 ATF6P18850 670 aa10.9□□□□□ -0.66
CLIP1-210ENST00000538120 VHLP40337 213 aa10.9□□□□□ -0.66
CLIP1-210ENST00000538120 NPY2RP49146 381 aa10.9□□□□□ -0.66
CLIP1-210ENST00000538120 NAB1Q13506 487 aa10.9□□□□□ -0.66
CLIP1-210ENST00000538120 FRG1Q14331 258 aaKnown RBP10.9□□□□□ -0.66
CLIP1-210ENST00000538120 ANKRD20A4Q4UJ75 823 aa10.9□□□□□ -0.66
CLIP1-210ENST00000538120 ALFQ53S48 1182 aa10.9□□□□□ -0.66
CLIP1-210ENST00000538120 KBTBD2Q8IY47 623 aa10.9□□□□□ -0.66
CLIP1-210ENST00000538120 DNAAF3Q8N9W5 541 aa10.9□□□□□ -0.66
CLIP1-210ENST00000538120 IGSF8Q969P0 613 aa10.9□□□□□ -0.66
CLIP1-210ENST00000538120 RNF166Q96A37 237 aaPredicted RBP10.9□□□□□ -0.66
CLIP1-210ENST00000538120 SKA1Q96BD8 255 aa10.9□□□□□ -0.66
CLIP1-210ENST00000538120 MYEOVQ96EZ4 313 aa10.9□□□□□ -0.66
CLIP1-210ENST00000538120 CERS2Q96G23 380 aa10.9□□□□□ -0.66
CLIP1-210ENST00000538120 NSL1Q96IY1 281 aa10.9□□□□□ -0.66
CLIP1-210ENST00000538120 TRIM55Q9BYV6 548 aa10.9□□□□□ -0.66
CLIP1-210ENST00000538120 SLC13A1Q9BZW2 595 aa10.9□□□□□ -0.66
CLIP1-210ENST00000538120 COMMD8Q9NX08 183 aa10.9□□□□□ -0.66
CLIP1-210ENST00000538120 STOML1Q9UBI4 398 aa10.9□□□□□ -0.66
CLIP1-210ENST00000538120 CDY1Q9Y6F8 540 aa10.9□□□□□ -0.66
CLIP1-210ENST00000538120 FAM237BA0A1B0GVD1 139 aa10.9□□□□□ -0.67
CLIP1-210ENST00000538120 SLC38A8A6NNN8 435 aa10.9□□□□□ -0.67
CLIP1-210ENST00000538120 PSMG1O95456 288 aa10.9□□□□□ -0.67
CLIP1-210ENST00000538120 TOP3BO95985 862 aaKnown RBP10.9□□□□□ -0.67
CLIP1-210ENST00000538120 MT-CYBP00156 380 aaPredicted RBP10.9□□□□□ -0.67
CLIP1-210ENST00000538120 HLA-DQB2P05538 268 aa10.9□□□□□ -0.67
CLIP1-210ENST00000538120 FESP07332 822 aa10.9□□□□□ -0.67
CLIP1-210ENST00000538120 DLDP09622 509 aaKnown RBP10.9□□□□□ -0.67
CLIP1-210ENST00000538120 CD46P15529 392 aa10.9□□□□□ -0.67
CLIP1-210ENST00000538120 RHOQP17081 205 aa10.9□□□□□ -0.67
CLIP1-210ENST00000538120 CNTFP26441 200 aa10.9□□□□□ -0.67
CLIP1-210ENST00000538120 SERPINB4P48594 390 aa10.9□□□□□ -0.67
CLIP1-210ENST00000538120 TLE2Q04725 743 aa10.9□□□□□ -0.67
CLIP1-210ENST00000538120 ZBTB16Q05516 673 aa10.9□□□□□ -0.67
CLIP1-210ENST00000538120 SMARCB1Q12824 385 aa10.9□□□□□ -0.67
CLIP1-210ENST00000538120 TRIM60Q495X7 471 aa10.9□□□□□ -0.67
CLIP1-210ENST00000538120 CMPK2Q5EBM0 449 aa10.9□□□□□ -0.67
CLIP1-210ENST00000538120 SPDYAQ5MJ70 313 aa10.9□□□□□ -0.67
CLIP1-210ENST00000538120 FOXB2Q5VYV0 432 aa10.9□□□□□ -0.67
CLIP1-210ENST00000538120 OR52E8Q6IFG1 317 aa10.9□□□□□ -0.67
CLIP1-210ENST00000538120 DENND5AQ6IQ26 1287 aa10.9□□□□□ -0.67
CLIP1-210ENST00000538120 ALYREFQ86V81 257 aaKnown RBP10.9□□□□□ -0.67
CLIP1-210ENST00000538120 MIB1Q86YT6 1006 aa10.9□□□□□ -0.67
CLIP1-210ENST00000538120 RNF168Q8IYW5 571 aaPredicted RBP10.9□□□□□ -0.67
CLIP1-210ENST00000538120 UMODL1-AS1Q8N2C9 162 aa10.9□□□□□ -0.67
CLIP1-210ENST00000538120 LRRC43Q8N309 656 aa10.9□□□□□ -0.67
CLIP1-210ENST00000538120 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.9□□□□□ -0.67
CLIP1-210ENST00000538120 ZNF669Q96BR6 464 aaPredicted RBP10.9□□□□□ -0.67
CLIP1-210ENST00000538120 MFSD3Q96ES6 412 aa10.9□□□□□ -0.67
CLIP1-210ENST00000538120 TSC22D3Q99576 134 aa10.9□□□□□ -0.67
CLIP1-210ENST00000538120 CCSER2Q9H7U1 834 aa10.9□□□□□ -0.67
CLIP1-210ENST00000538120 TLR8Q9NR97 1041 aaKnown RBP10.9□□□□□ -0.67
CLIP1-210ENST00000538120 CHRAC1Q9NRG0 131 aa10.9□□□□□ -0.67
CLIP1-210ENST00000538120 MARCH2Q9P0N8 246 aa10.9□□□□□ -0.67
CLIP1-210ENST00000538120 PPARGC1AQ9UBK2 798 aaKnown RBP10.9□□□□□ -0.67
CLIP1-210ENST00000538120 ZNF212Q9UDV6 495 aa10.9□□□□□ -0.67
CLIP1-210ENST00000538120 DRGXA6NNA5 263 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 ATP9BO43861 1147 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 USP1O94782 785 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 ALDOAP04075 364 aaKnown RBP10.89□□□□□ -0.67
CLIP1-210ENST00000538120 MYL2P10916 166 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 RPL17P18621 184 aaKnown RBP10.89□□□□□ -0.67
CLIP1-210ENST00000538120 CRHR1P34998 444 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 ADRA1AP35348 466 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 PRPSAP1Q14558 356 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 C10orf120Q5SQS8 335 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 CES4AQ5XG92 561 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 SLC8B1Q6J4K2 584 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 FBXL22Q6P050 247 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 LRRC74BQ6ZQY2 392 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 RASSF3Q86WH2 238 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 NDUFAF2Q8N183 169 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.89□□□□□ -0.67
CLIP1-210ENST00000538120 ZNF398Q8TD17 642 aa10.89□□□□□ -0.67
CLIP1-210ENST00000538120 C2orf15Q8WU43 125 aaKnown RBP10.89□□□□□ -0.67
CLIP1-210ENST00000538120 CDKL2Q92772 493 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms