RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 ORAI3Q9BRQ5 295 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 DESI2Q9BSY9 194 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.35□□□□□ -0.75
VPS28-204ENST00000526054 TMEM248Q9NWD8 314 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 FTSJ1Q9UET6 329 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 VPS28Q9UK41 221 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 FZD4Q9ULV1 537 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 NEU3Q9UQ49 428 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 ERVW-1Q9UQF0 538 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 REXO2Q9Y3B8 237 aaKnown RBP10.35□□□□□ -0.75
VPS28-204ENST00000526054 GPSM3Q9Y4H4 160 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 ANKRD11Q6UB99 2663 aaPredicted RBP10.35□□□□□ -0.75
VPS28-204ENST00000526054 BPTFQ12830 3046 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 CABIN1Q9Y6J0 2220 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 A0A1W2PPC4 97 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 ILVBLA1L0T0 632 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 LRRC72A6NJI9 287 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 WASH4PA8MWX3 477 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 TTC34A8MYJ7 566 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 VILLO15195 856 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 PJA2O43164 708 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 SPOPO43791 374 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 DFNA5O60443 496 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 RAMP2O60895 175 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 DKK1O94907 266 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 RARAP10276 462 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 TCF4P15884 667 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 MZF1P28698 734 aaPredicted RBP10.34□□□□□ -0.75
VPS28-204ENST00000526054 NNMTP40261 264 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 CTSOP43234 321 aaPredicted RBP10.34□□□□□ -0.75
VPS28-204ENST00000526054 ECT2LQ008S8 904 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 GNA12Q03113 381 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 KIF5AQ12840 1032 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 COL9A2Q14055 689 aaPredicted RBP10.34□□□□□ -0.75
VPS28-204ENST00000526054 IFI16Q16666 785 aaKnown RBP10.34□□□□□ -0.75
VPS28-204ENST00000526054 CA9Q16790 459 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 C9orf64Q5T6V5 341 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 C11orf63Q6NUN7 778 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 RFX8Q6ZV50 586 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 POLNQ7Z5Q5 900 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 NLRP14Q86W24 1093 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 APCDD1Q8J025 514 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 DCAF4L2Q8NA75 395 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 OR2T34Q8NGX1 318 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 SKA1Q96BD8 255 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 FEM1AQ9BSK4 669 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 C2orf49Q9BVC5 232 aaPredicted RBP10.34□□□□□ -0.75
VPS28-204ENST00000526054 MAGEB5Q9BZ81 275 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 TSGA10Q9BZW7 698 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 AASDHPPTQ9NRN7 309 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 ZNF212Q9UDV6 495 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 SLC25A13Q9UJS0 675 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 TFR2Q9UP52 801 aa10.34□□□□□ -0.75
VPS28-204ENST00000526054 A0A1B0GTQ1 180 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 TARSL2A2RTX5 802 aaKnown RBP10.33□□□□□ -0.76
VPS28-204ENST00000526054 RCCD1A6NED2 376 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 BUB1BO60566 1050 aaPredicted RBP10.33□□□□□ -0.76
VPS28-204ENST00000526054 ADH1BP00325 375 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 GOT1P17174 413 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 SLC8A1P32418 973 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 HCAR3P49019 387 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 NUMBP49757 651 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 STK19P49842 368 aaPredicted RBP10.33□□□□□ -0.76
VPS28-204ENST00000526054 ADPRHP54922 357 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 CDH6P55285 790 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 TAS2R40P59535 323 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 CCZ1BP86790 482 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 CCZ1P86791 482 aaPredicted RBP10.33□□□□□ -0.76
VPS28-204ENST00000526054 ELAVL3Q14576 367 aaKnown RBP10.33□□□□□ -0.76
VPS28-204ENST00000526054 PDK2Q15119 407 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 ODF2Q5BJF6 829 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 ARTNQ5T4W7 220 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 TXNRD3NBQ6F5E7 133 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 C19orf48Q6RUI8 117 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 MAP7D3Q8IWC1 876 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 RHOT1Q8IXI2 618 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 STK40Q8N2I9 435 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 AADATQ8N5Z0 425 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 OR52K2Q8NGK3 314 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 TRIM44Q96DX7 344 aaPredicted RBP10.33□□□□□ -0.76
VPS28-204ENST00000526054 ALG14Q96F25 216 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 RPL10LQ96L21 214 aaKnown RBP10.33□□□□□ -0.76
VPS28-204ENST00000526054 ELF4Q99607 663 aaPredicted RBP10.33□□□□□ -0.76
VPS28-204ENST00000526054 SPON2Q9BUD6 331 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 MAGEH1Q9H213 219 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 NEUROG2Q9H2A3 272 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 PCDH18Q9HCL0 1135 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 ATP13A1Q9HD20 1204 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 RCOR3Q9P2K3 495 aaPredicted RBP10.33□□□□□ -0.76
VPS28-204ENST00000526054 DNAI1Q9UI46 699 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 RAXQ9Y2V3 346 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 OR51B4Q9Y5P0 310 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 ADGRG1Q9Y653 693 aa10.33□□□□□ -0.76
VPS28-204ENST00000526054 SMG1Q96Q15 3661 aaKnown RBP10.33□□□□□ -0.76
VPS28-204ENST00000526054 APC2O95996 2303 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 ACACAQ13085 2346 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 A0A0D9SEW6 157 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 FAM149AA5PLN7 773 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 YKT6O15498 198 aa10.32□□□□□ -0.76
VPS28-204ENST00000526054 PSTPIP1O43586 416 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms