RNA–Protein interactions for RNA: ENST00000520580.5

SREK1-208, Transcript of splicing regulatory glutamic acid and lysine rich protein 1, human

TSL 2

Gene SREK1, Length 2,369 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREK1-208	ENST00000520580	CHST2	Q9Y4C5	530 aa		3.78	□□□□□ -1.8
SREK1-208	ENST00000520580	NOX1	Q9Y5S8	564 aa		3.78	□□□□□ -1.8
SREK1-208	ENST00000520580	KRTAP9-6	A0A140TA67	174 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	CAPN14	A8MX76	684 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	DDX39A	O00148	427 aa	Known RBP	3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	BIN1	O00499	593 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	SLC16A3	O15427	465 aa	Known RBP	3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	CNTN5	O94779	1100 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	BCL10	O95999	233 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	SNRNP70	P08621	437 aa	Known RBP	3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	FAM200B	P0CF97	657 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	SLC2A4	P14672	509 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	ENG	P17813	658 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	TRIM21	P19474	475 aa	Known RBP	3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	NDUFS1	P28331	727 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	RPS19	P39019	145 aa	Known RBP	3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	CSE1L	P55060	971 aa	Known RBP	3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	YBEY	P58557	167 aa	Predicted RBP	3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	WDR5	P61964	334 aa	Known RBP	3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	ACTN3	Q08043	901 aa	Predicted RBP	3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	DMWD	Q09019	674 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	LMAN2	Q12907	356 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	GRAP	Q13588	217 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	ALCAM	Q13740	583 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	TMEM198	Q66K66	360 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	JADE1	Q6IE81	842 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	IL20RB	Q6UXL0	311 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	DHX40	Q8IX18	779 aa	Known RBP	3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	FUK	Q8N0W3	1084 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	ZNF619	Q8N2I2	560 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	HJURP	Q8NCD3	748 aa	Predicted RBP	3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	LILRB1	Q8NHL6	650 aa	Predicted RBP	3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	UTP15	Q8TED0	518 aa	Known RBP	3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	ZNF622	Q969S3	477 aa	Known RBP eCLIP	3.77	□□□□□ -1.81	7e-7	■■□□□ 12.4
SREK1-208	ENST00000520580	PGAM5	Q96HS1	289 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	ADAD1	Q96M93	576 aa	Known RBP	3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	CCDC43	Q96MW1	224 aa	Known RBP	3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	RAB3IP	Q96QF0	476 aa	Predicted RBP	3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	KIFC3	Q9BVG8	833 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	SCNM1	Q9BWG6	230 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	CADM1	Q9BY67	442 aa	Known RBP	3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	KRTAP9-2	Q9BYQ4	174 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	GOLPH3L	Q9H4A5	285 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	ZNF768	Q9H5H4	540 aa	Known RBP	3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	TRIM36	Q9NQ86	728 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	TRMT1	Q9NXH9	659 aa	Known RBP	3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	MOSPD1	Q9UJG1	213 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	DHDH	Q9UQ10	334 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	KLHL20	Q9Y2M5	609 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	UNC119B	A6NIH7	251 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	TTC36	A6NLP5	189 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	PRY	O14603	147 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	PRPF4	O43172	522 aa	Known RBP eCLIP	3.77	□□□□□ -1.81	2e-6	■□□□□ 9.3
SREK1-208	ENST00000520580	AVIL	O75366	819 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	RAD17	O75943	681 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	CHRM2	P08172	466 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	SRPRA	P08240	638 aa	Known RBP	3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	MMP9	P14780	707 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	HOXB9	P17482	250 aa	Predicted RBP	3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	MTHFR	P42898	656 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	VPS41	P49754	854 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	SUOX	P51687	545 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	VAV2	P52735	878 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	COPB1	P53618	953 aa	Known RBP	3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	POLR2F	P61218	127 aa	Known RBP	3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	MRPS5	P82675	430 aa	Known RBP	3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	PSG6	Q00889	435 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	IL1RL1	Q01638	556 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	RNPS1	Q15287	305 aa	Known RBP	3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	DLG2	Q15700	870 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	KRTCAP3	Q53RY4	240 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	LRRC8E	Q6NSJ5	796 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	PRSS45	Q7RTY3	260 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	CCAR2	Q8N163	923 aa	Known RBP	3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	TMEM151A	Q8N4L1	468 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	MINDY1	Q8N5J2	469 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	PTCD3	Q96EY7	689 aa	Known RBP	3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	FUT8	Q9BYC5	575 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	PCED1A	Q9H1Q7	454 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	MEGF9	Q9H1U4	602 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	THAP9	Q9H5L6	903 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	SFXN1	Q9H9B4	322 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	ENTPD7	Q9NQZ7	604 aa		3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	CNOT6	Q9ULM6	557 aa	Known RBP	3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	REXO2	Q9Y3B8	237 aa	Known RBP	3.77	□□□□□ -1.81
SREK1-208	ENST00000520580	LOC102723996	A0A087X1L8	192 aa		3.76	□□□□□ -1.81
SREK1-208	ENST00000520580	OR6C68	A6NDL8	312 aa		3.76	□□□□□ -1.81
SREK1-208	ENST00000520580	AHRR	A9YTQ3	701 aa		3.76	□□□□□ -1.81
SREK1-208	ENST00000520580	PROM1	O43490	865 aa		3.76	□□□□□ -1.81
SREK1-208	ENST00000520580	NDUFS3	O75489	264 aa		3.76	□□□□□ -1.81
SREK1-208	ENST00000520580	CAMTA2	O94983	1202 aa		3.76	□□□□□ -1.81
SREK1-208	ENST00000520580	ZWINT	O95229	277 aa		3.76	□□□□□ -1.81
SREK1-208	ENST00000520580	ERCC2	P18074	760 aa		3.76	□□□□□ -1.81
SREK1-208	ENST00000520580	DNASE1	P24855	282 aa		3.76	□□□□□ -1.81
SREK1-208	ENST00000520580	PON1	P27169	355 aa		3.76	□□□□□ -1.81
SREK1-208	ENST00000520580	CD86	P42081	329 aa		3.76	□□□□□ -1.81
SREK1-208	ENST00000520580	ALDH3A2	P51648	485 aa		3.76	□□□□□ -1.81
SREK1-208	ENST00000520580	MESP2	Q0VG99	397 aa		3.76	□□□□□ -1.81
SREK1-208	ENST00000520580	GRIK3	Q13003	919 aa		3.76	□□□□□ -1.81
SREK1-208	ENST00000520580	REST	Q13127	1097 aa		3.76	□□□□□ -1.81

Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms