RNA–Protein interactions for RNA: ENST00000517578.1

HMGB1P19-201, Transcript of high mobility group box 1 pseudogene 19, humanhuman

BASIC

Gene HMGB1P19, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P19-201ENST00000517578 CSTF3Q12996 717 aaKnown RBP4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 TOP3AQ13472 1001 aaPredicted RBP4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 SNAPC2Q13487 334 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 PTPAQ15257 358 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 TRIP10Q15642 601 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 PKN2Q16513 984 aaKnown RBP4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 ASIC2Q16515 512 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 GRAMD1BQ3KR37 738 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 ZC3H12BQ5HYM0 836 aaKnown RBP4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 TEDDM1Q5T9Z0 273 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 TDRD10Q5VZ19 366 aaKnown RBP4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 RRAGBQ5VZM2 374 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 DUPD1Q68J44 220 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 ITPRIPL1Q6GPH6 555 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 OR7E24Q6IFN5 339 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 STYK1Q6J9G0 422 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 UNC5AQ6ZN44 842 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 PLEKHG7Q6ZR37 379 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 SPATC1Q76KD6 591 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 OTOP3Q7RTS5 596 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 ATG9AQ7Z3C6 839 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 SETD3Q86TU7 594 aaPredicted RBP4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 TLK2Q86UE8 772 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 NLRP10Q86W26 655 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 TPH2Q8IWU9 490 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 UBE2J2Q8N2K1 259 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 LIX1Q8N485 282 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 DNAAF3Q8N9W5 541 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 TEX19Q8NA77 164 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 OR52K2Q8NGK3 314 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 VANGL1Q8TAA9 524 aaPredicted RBP4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 TBC1D15Q8TC07 691 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 LRRC20Q8TCA0 184 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 ACTRT2Q8TDY3 377 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 FNIP1Q8TF40 1166 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 PDCD6IPQ8WUM4 868 aaKnown RBP4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 C10orf82Q8WW14 230 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 JPH3Q8WXH2 748 aaPredicted RBP4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 LINC01599Q8WXQ3 324 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 PIK3R3Q92569 461 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 DHX38Q92620 1227 aaKnown RBP4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 KRT35Q92764 455 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 DLG3Q92796 817 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 ISOC1Q96CN7 298 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 MCRS1Q96EZ8 462 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 PDXPQ96GD0 296 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 AK8Q96MA6 479 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 FAM20AQ96MK3 541 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 ZNF560Q96MR9 790 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 KCNK16Q96T55 309 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 ALG1Q9BT22 464 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 G6PC3Q9BUM1 346 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 C9orf16Q9BUW7 83 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 BTBD2Q9BX70 525 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 TGIF2Q9GZN2 237 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 PPA2Q9H2U2 334 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 DHX33Q9H6R0 707 aaKnown RBP4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 ZNF552Q9H707 407 aaPredicted RBP4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 TMEM206Q9H813 350 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 PLEKHA5Q9HAU0 1116 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 FAM86C1Q9NVL1 165 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 PIH1D1Q9NWS0 290 aaKnown RBP4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 MCM9Q9NXL9 1143 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 PKD2L2Q9NZM6 624 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 COPG2Q9UBF2 871 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 PGAP2Q9UHJ9 254 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 TAGLN3Q9UI15 199 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 VPS51Q9UID3 782 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 ZNF221Q9UK13 617 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 POU2F3Q9UKI9 436 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 PSMD13Q9UNM6 376 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 INPP5FQ9Y2H2 1132 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 QRICH2Q9H0J4 1663 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 TDRD9Q8NDG6 1382 aaKnown RBP4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 MED23Q9ULK4 1368 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 MST1RQ04912 1400 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 TSPOAP1O95153 1857 aa4.88□□□□□ -1.63
HMGB1P19-201ENST00000517578 MAGI3Q5TCQ9 1506 aa4.87□□□□□ -1.63
HMGB1P19-201ENST00000517578 MYH10P35580 1976 aa4.87□□□□□ -1.63
HMGB1P19-201ENST00000517578 TMEM131LA2VDJ0 1609 aa4.87□□□□□ -1.63
HMGB1P19-201ENST00000517578 ESYT2A0FGR8 921 aa4.87□□□□□ -1.63
HMGB1P19-201ENST00000517578 ZSCAN5CA6NGD5 496 aaPredicted RBP4.87□□□□□ -1.63
HMGB1P19-201ENST00000517578 SAC3D1A6NKF1 404 aa4.87□□□□□ -1.63
HMGB1P19-201ENST00000517578 LACTBL1A8MY62 500 aa4.87□□□□□ -1.63
HMGB1P19-201ENST00000517578 hCG_2039718K7EN88 272 aa4.87□□□□□ -1.63
HMGB1P19-201ENST00000517578 MEIS1O00470 390 aa4.87□□□□□ -1.63
HMGB1P19-201ENST00000517578 KCNK3O14649 394 aa4.87□□□□□ -1.63
HMGB1P19-201ENST00000517578 TM9SF1O15321 606 aa4.87□□□□□ -1.63
HMGB1P19-201ENST00000517578 RIPK2O43353 540 aa4.87□□□□□ -1.63
HMGB1P19-201ENST00000517578 CALUO43852 315 aaPredicted RBP4.87□□□□□ -1.63
HMGB1P19-201ENST00000517578 PSPNO60542 156 aa4.87□□□□□ -1.63
HMGB1P19-201ENST00000517578 CCNT2O60583 730 aaKnown RBP4.87□□□□□ -1.63
HMGB1P19-201ENST00000517578 RFPL2O75678 378 aa4.87□□□□□ -1.63
HMGB1P19-201ENST00000517578 PALMO75781 387 aa4.87□□□□□ -1.63
HMGB1P19-201ENST00000517578 CSPG5O95196 566 aa4.87□□□□□ -1.63
HMGB1P19-201ENST00000517578 CBX6O95503 412 aa4.87□□□□□ -1.63
HMGB1P19-201ENST00000517578 SNAP29O95721 258 aa4.87□□□□□ -1.63
HMGB1P19-201ENST00000517578 TGM6O95932 706 aa4.87□□□□□ -1.63
HMGB1P19-201ENST00000517578 NPPAP01160 153 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms