RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 BCKDHBP21953 392 aa14.48□□□□□ -0.09
NUP54-216ENST00000514901 PTPN7P35236 360 aa14.48□□□□□ -0.09
NUP54-216ENST00000514901 DPP6P42658 865 aa14.48□□□□□ -0.09
NUP54-216ENST00000514901 MAPK8P45983 427 aa14.48□□□□□ -0.09
NUP54-216ENST00000514901 MARCKSL1P49006 195 aa14.48□□□□□ -0.09
NUP54-216ENST00000514901 SLC10A2Q12908 348 aaPredicted RBP14.48□□□□□ -0.09
NUP54-216ENST00000514901 HNRNPDQ14103 355 aaKnown RBP14.48□□□□□ -0.09
NUP54-216ENST00000514901 MARC1Q5VT66 337 aa14.48□□□□□ -0.09
NUP54-216ENST00000514901 KAZNQ674X7 775 aa14.48□□□□□ -0.09
NUP54-216ENST00000514901 PMS2CLQ68D20 193 aa14.48□□□□□ -0.09
NUP54-216ENST00000514901 FRMD1Q8N878 549 aa14.48□□□□□ -0.09
NUP54-216ENST00000514901 TRIM58Q8NG06 486 aa14.48□□□□□ -0.09
NUP54-216ENST00000514901 HDAC11Q96DB2 347 aa14.48□□□□□ -0.09
NUP54-216ENST00000514901 ZNF419Q96HQ0 510 aaPredicted RBP14.48□□□□□ -0.09
NUP54-216ENST00000514901 HES6Q96HZ4 224 aa14.48□□□□□ -0.09
NUP54-216ENST00000514901 HDAC8Q9BY41 377 aa14.48□□□□□ -0.09
NUP54-216ENST00000514901 KDM4CQ9H3R0 1056 aa14.48□□□□□ -0.09
NUP54-216ENST00000514901 LHX3Q9UBR4 397 aa14.48□□□□□ -0.09
NUP54-216ENST00000514901 AMACRQ9UHK6 382 aa14.48□□□□□ -0.09
NUP54-216ENST00000514901 GMEB2Q9UKD1 530 aa14.48□□□□□ -0.09
NUP54-216ENST00000514901 SARDHQ9UL12 918 aa14.48□□□□□ -0.09
NUP54-216ENST00000514901 TPX2Q9ULW0 747 aaKnown RBP14.48□□□□□ -0.09
NUP54-216ENST00000514901 PCDHGA5Q9Y5G8 931 aa14.48□□□□□ -0.09
NUP54-216ENST00000514901 HEY1Q9Y5J3 304 aa14.48□□□□□ -0.09
NUP54-216ENST00000514901 WASF2Q9Y6W5 498 aa14.48□□□□□ -0.09
NUP54-216ENST00000514901 WDR87Q6ZQQ6 2873 aa14.48□□□□□ -0.09
NUP54-216ENST00000514901 NUMA1Q14980 2115 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 NYNRINQ9P2P1 1898 aaKnown RBP14.47□□□□□ -0.09
NUP54-216ENST00000514901 LRRC72A6NJI9 287 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 KPNA3O00505 521 aaPredicted RBP14.47□□□□□ -0.09
NUP54-216ENST00000514901 KRIT1O00522 736 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 PEX11BO96011 259 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 RETP07949 1114 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 KRT10P13645 584 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 CES1P23141 567 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 ITGB7P26010 798 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 PLA2G5P39877 138 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 MMP13P45452 471 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 PPIDQ08752 370 aaKnown RBP14.47□□□□□ -0.09
NUP54-216ENST00000514901 SLC10A7Q0GE19 358 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 ZNF235Q14590 738 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 RALGPS1Q5JS13 557 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 ATXN7L2Q5T6C5 722 aaPredicted RBP14.47□□□□□ -0.09
NUP54-216ENST00000514901 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP14.47□□□□□ -0.09
NUP54-216ENST00000514901 SRLQ86TD4 932 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 FAM124AQ86V42 546 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 CCDC13Q8IYE1 715 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 AADATQ8N5Z0 425 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 TEX26Q8N6G2 289 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 TSEN2Q8NCE0 465 aaKnown RBP14.47□□□□□ -0.09
NUP54-216ENST00000514901 CCNYQ8ND76 341 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 HCAR2Q8TDS4 363 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 MAML1Q92585 1016 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 ALG3Q92685 438 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 P3H4Q92791 437 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 FAM131CQ96AQ9 280 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 TUBGCP5Q96RT8 1024 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 GPR174Q9BXC1 333 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 OSBPL8Q9BZF1 889 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 NEUROG2Q9H2A3 272 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 KCNF1Q9H3M0 494 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 ZDHHC6Q9H6R6 413 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 CD93Q9NPY3 652 aa14.47□□□□□ -0.09
NUP54-216ENST00000514901 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.46□□□□□ -0.09
NUP54-216ENST00000514901 PRR23AA6NEV1 266 aa14.46□□□□□ -0.09
NUP54-216ENST00000514901 DDX3YO15523 660 aaKnown RBP14.46□□□□□ -0.09
NUP54-216ENST00000514901 TJP3O95049 919 aa14.46□□□□□ -0.09
NUP54-216ENST00000514901 SEMA4FO95754 770 aa14.46□□□□□ -0.09
NUP54-216ENST00000514901 ACSL1P33121 698 aa14.46□□□□□ -0.09
NUP54-216ENST00000514901 DRD3P35462 400 aa14.46□□□□□ -0.09
NUP54-216ENST00000514901 DHPSP49366 369 aaPredicted RBP14.46□□□□□ -0.09
NUP54-216ENST00000514901 DYNLT1P63172 113 aa14.46□□□□□ -0.09
NUP54-216ENST00000514901 CNTN1Q12860 1018 aa14.46□□□□□ -0.09
NUP54-216ENST00000514901 RPS6KA1Q15418 735 aa14.46□□□□□ -0.09
NUP54-216ENST00000514901 ZNF805Q5CZA5 627 aa14.46□□□□□ -0.09
NUP54-216ENST00000514901 WDR45BQ5MNZ6 344 aa14.46□□□□□ -0.09
NUP54-216ENST00000514901 SYCP2LQ5T4T6 812 aa14.46□□□□□ -0.09
NUP54-216ENST00000514901 CCDC181Q5TID7 509 aa14.46□□□□□ -0.09
NUP54-216ENST00000514901 GDPD4Q6W3E5 623 aa14.46□□□□□ -0.09
NUP54-216ENST00000514901 BBS12Q6ZW61 710 aa14.46□□□□□ -0.09
NUP54-216ENST00000514901 ERN2Q76MJ5 926 aaKnown RBP14.46□□□□□ -0.09
NUP54-216ENST00000514901 TMEFF1Q8IYR6 380 aa14.46□□□□□ -0.09
NUP54-216ENST00000514901 OR2T34Q8NGX1 318 aa14.46□□□□□ -0.09
NUP54-216ENST00000514901 GRIN3AQ8TCU5 1115 aa14.46□□□□□ -0.09
NUP54-216ENST00000514901 RUBCNQ92622 972 aa14.46□□□□□ -0.09
NUP54-216ENST00000514901 ZNF641Q96N77 438 aaPredicted RBP14.46□□□□□ -0.09
NUP54-216ENST00000514901 OLFM3Q96PB7 478 aa14.46□□□□□ -0.09
NUP54-216ENST00000514901 PHOX2BQ99453 314 aa14.46□□□□□ -0.09
NUP54-216ENST00000514901 DKK3Q9UBP4 350 aa14.46□□□□□ -0.09
NUP54-216ENST00000514901 EVLQ9UI08 416 aaPredicted RBP14.46□□□□□ -0.09
NUP54-216ENST00000514901 MYO15AQ9UKN7 3530 aa14.46□□□□□ -0.1
NUP54-216ENST00000514901 DMDP11532 3685 aa14.46□□□□□ -0.1
NUP54-216ENST00000514901 SHROOM3Q8TF72 1996 aa14.45□□□□□ -0.1
NUP54-216ENST00000514901 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP14.45□□□□□ -0.1
NUP54-216ENST00000514901 METTL12A8MUP2 240 aa14.45□□□□□ -0.1
NUP54-216ENST00000514901 APOC4-APOC2K7ER74 178 aa14.45□□□□□ -0.1
NUP54-216ENST00000514901 LRP3O75074 770 aa14.45□□□□□ -0.1
NUP54-216ENST00000514901 NEBLO76041 1014 aa14.45□□□□□ -0.1
NUP54-216ENST00000514901 EPN2O95208 641 aa14.45□□□□□ -0.1
NUP54-216ENST00000514901 MAP3K6O95382 1288 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms