RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 EMILIN2Q9BXX0 1053 aa7.53□□□□□ -1.2
CLIP1-205ENST00000514271 NKX2-4Q9H2Z4 354 aa7.53□□□□□ -1.2
CLIP1-205ENST00000514271 ZNF576Q9H609 170 aa7.53□□□□□ -1.2
CLIP1-205ENST00000514271 KCNK9Q9NPC2 374 aa7.53□□□□□ -1.2
CLIP1-205ENST00000514271 SNTG2Q9NY99 539 aa7.53□□□□□ -1.2
CLIP1-205ENST00000514271 PCDHB8Q9UN66 801 aa7.53□□□□□ -1.2
CLIP1-205ENST00000514271 A0A1W2PRQ8 180 aa7.53□□□□□ -1.2
CLIP1-205ENST00000514271 ASS1P00966 412 aaKnown RBP7.53□□□□□ -1.2
CLIP1-205ENST00000514271 SOD2P04179 222 aa7.53□□□□□ -1.2
CLIP1-205ENST00000514271 KRT10P13645 584 aa7.53□□□□□ -1.2
CLIP1-205ENST00000514271 TRIP13Q15645 432 aaPredicted RBP7.53□□□□□ -1.2
CLIP1-205ENST00000514271 KCTD21Q4G0X4 260 aa7.53□□□□□ -1.2
CLIP1-205ENST00000514271 PAOXQ6QHF9 649 aa7.53□□□□□ -1.2
CLIP1-205ENST00000514271 NAPRTQ6XQN6 538 aa7.53□□□□□ -1.2
CLIP1-205ENST00000514271 RBM44Q6ZP01 1051 aaKnown RBP7.53□□□□□ -1.2
CLIP1-205ENST00000514271 PQLC1Q8N2U9 271 aa7.53□□□□□ -1.2
CLIP1-205ENST00000514271 ANKFN1Q8N957 763 aa7.53□□□□□ -1.2
CLIP1-205ENST00000514271 FLCNQ8NFG4 579 aa7.53□□□□□ -1.2
CLIP1-205ENST00000514271 MAPK15Q8TD08 544 aa7.53□□□□□ -1.2
CLIP1-205ENST00000514271 IGSF21Q96ID5 467 aa7.53□□□□□ -1.2
CLIP1-205ENST00000514271 NELL2Q99435 816 aa7.53□□□□□ -1.2
CLIP1-205ENST00000514271 TMEM121Q9BTD3 319 aa7.53□□□□□ -1.2
CLIP1-205ENST00000514271 KIFC3Q9BVG8 833 aa7.53□□□□□ -1.2
CLIP1-205ENST00000514271 NXF3Q9H4D5 531 aaKnown RBP7.53□□□□□ -1.2
CLIP1-205ENST00000514271 NRDE2Q9H7Z3 1164 aa7.53□□□□□ -1.2
CLIP1-205ENST00000514271 PARVAQ9NVD7 372 aa7.53□□□□□ -1.2
CLIP1-205ENST00000514271 IGSF9Q9P2J2 1179 aa7.53□□□□□ -1.2
CLIP1-205ENST00000514271 ASIC3Q9UHC3 531 aa7.53□□□□□ -1.2
CLIP1-205ENST00000514271 FAM50BQ9Y247 325 aa7.53□□□□□ -1.2
CLIP1-205ENST00000514271 MAD1L1Q9Y6D9 718 aa7.53□□□□□ -1.2
CLIP1-205ENST00000514271 SMIM28A0A1B0GU29 152 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 OR6C75A6NL08 312 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 B2RBV5 119 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 UGT1A9O60656 530 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 TADA2AO75478 443 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 CYP11A1P05108 521 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 GALTP07902 379 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 CYP2J2P51589 502 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 HK2P52789 917 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 BCAR1P56945 870 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 PLD1Q13393 1074 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 GPM6BQ13491 265 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 CUL2Q13617 745 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 SPCS2Q15005 226 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 SPOUT1Q5T280 376 aaKnown RBP7.52□□□□□ -1.21
CLIP1-205ENST00000514271 RWDD4Q6NW29 188 aaKnown RBP7.52□□□□□ -1.21
CLIP1-205ENST00000514271 ANKS3Q6ZW76 656 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 TOP6BLQ8N6T0 577 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 HM13Q8TCT9 377 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 CPA5Q8WXQ8 436 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 TFAP2CQ92754 450 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 SUSD3Q96L08 255 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 ZNF512Q96ME7 567 aaPredicted RBP7.52□□□□□ -1.21
CLIP1-205ENST00000514271 GPR78Q96P69 363 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 PPP1R16BQ96T49 567 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 UGT1A7Q9HAW7 530 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 UGT1A10Q9HAW8 530 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 UGT1A8Q9HAW9 530 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 SCUBE2Q9NQ36 999 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 DNAJC17Q9NVM6 304 aaKnown RBP7.52□□□□□ -1.21
CLIP1-205ENST00000514271 NDE1Q9NXR1 346 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 ZMYM5Q9UJ78 669 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 IKBKGQ9Y6K9 419 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 TMEM110-MUSTN1A8MSY1 372 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 CYB561D2O14569 222 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 CACNG3O60359 315 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 PLIN3O60664 434 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 ZCCHC18P0CG32 403 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 CTSAP10619 480 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 ODC1P11926 461 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 DNAJA1P31689 397 aaKnown RBP7.52□□□□□ -1.21
CLIP1-205ENST00000514271 SF3A3Q12874 501 aaKnown RBP eCLIP7.52□□□□□ -1.21
CLIP1-205ENST00000514271 SLC10A6Q3KNW5 377 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 METTL23Q86XA0 190 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 XYLT1Q86Y38 959 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 EPHX4Q8IUS5 362 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 PHTF2Q8N3S3 785 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 PPP1R13LQ8WUF5 828 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 IMPG2Q9BZV3 1241 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 BRD8Q9H0E9 1235 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 PCIF1Q9H4Z3 704 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 NSUN3Q9H649 340 aaKnown RBP7.52□□□□□ -1.21
CLIP1-205ENST00000514271 CYP3A43Q9HB55 503 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 EIF2B3Q9NR50 452 aaKnown RBP7.52□□□□□ -1.21
CLIP1-205ENST00000514271 ARMC1Q9NVT9 282 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 GDAP2Q9NXN4 497 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 HECAQ9UBI9 543 aaPredicted RBP7.52□□□□□ -1.21
CLIP1-205ENST00000514271 ABCD2Q9UBJ2 740 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 PTBP2Q9UKA9 531 aaKnown RBP7.52□□□□□ -1.21
CLIP1-205ENST00000514271 ADAM28Q9UKQ2 775 aa7.52□□□□□ -1.21
CLIP1-205ENST00000514271 TCAF2A6NFQ2 919 aa7.51□□□□□ -1.21
CLIP1-205ENST00000514271 M0QZQ0 153 aa7.51□□□□□ -1.21
CLIP1-205ENST00000514271 GRID2O43424 1007 aa7.51□□□□□ -1.21
CLIP1-205ENST00000514271 URODP06132 367 aa7.51□□□□□ -1.21
CLIP1-205ENST00000514271 TROVE2P10155 538 aaKnown RBP eCLIP7.51□□□□□ -1.21
CLIP1-205ENST00000514271 TAF6P49848 677 aa7.51□□□□□ -1.21
CLIP1-205ENST00000514271 MLLT10P55197 1068 aa7.51□□□□□ -1.21
CLIP1-205ENST00000514271 GPS1Q13098 491 aa7.51□□□□□ -1.21
CLIP1-205ENST00000514271 NAB1Q13506 487 aa7.51□□□□□ -1.21
CLIP1-205ENST00000514271 CEACAM7Q14002 265 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms