RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 TRMT2BQ96GJ1 504 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 MKRN2Q9H000 416 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 CSNK1G1Q9HCP0 422 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 OSGEPQ9NPF4 335 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 RXFP3Q9NSD7 469 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 NDFIP2Q9NV92 336 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 COMMD8Q9NX08 183 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 ATXN10Q9UBB4 475 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 CORO1CQ9ULV4 474 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 HEY1Q9Y5J3 304 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 TBC1D3DA0A087WVF3 549 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 TBC1D3IA0A087WXS9 549 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 TBC1D3EA0A087X179 549 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 TBC1D3KA0A087X1G2 549 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 TARSL2A2RTX5 802 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 TBC1D3FA6NER0 549 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 TBC1D3LB9A6J9 549 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 GYPCP04921 128 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 TBC1D3HP0C7X1 549 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 BCKDHBP21953 392 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 ACADSBP45954 432 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 TBC1D3GQ6DHY5 549 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 TBC1D3CQ6IPX1 549 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 KBTBD6Q86V97 674 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 XYLT1Q86Y38 959 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 TP53INP2Q8IXH6 220 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 TBC1D3Q8IZP1 549 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 ATP6V0D2Q8N8Y2 350 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 IL17RCQ8NAC3 791 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 MGARPQ8TDB4 240 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 RNF25Q96BH1 459 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 SIPA1Q96FS4 1042 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 VPS50Q96JG6 964 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 ZFRQ96KR1 1074 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 HSFY1Q96LI6 401 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 ATP13A1Q9HD20 1204 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 FZD3Q9NPG1 666 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 OR12D3Q9UGF7 316 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 KIAA1257Q9ULG3 409 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 A0A1W2PP55 124 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 CCDC151A5D8V7 595 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 SOWAHDA6NJG2 315 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 HMGB1P1B2RPK0 211 aaPredicted RBP8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 KRIT1O00522 736 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 HSF2BPO75031 334 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 RPP40O75818 363 aaKnown RBP8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 STAU1O95793 577 aaKnown RBP8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 KRT81Q14533 505 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 BRD3Q15059 726 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 SPECC1LQ69YQ0 1117 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 SHQ1Q6PI26 577 aaKnown RBP8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 C11orf74Q86VG3 221 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 UCMAQ8WVF2 138 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 OMDQ99983 421 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 HEMGNQ9BXL5 484 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 MAK16Q9BXY0 300 aaKnown RBP8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 CYLDQ9NQC7 956 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 ELOVL2Q9NXB9 296 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 FAM8A1Q9UBU6 413 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 PACSIN2Q9UNF0 486 aaPredicted RBP8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 E2F8A0AVK6 867 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 SPOPO43791 374 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 PRPSAP2O60256 369 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 SMNDC1O75940 238 aaKnown RBP eCLIP8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 LINGO3P0C6S8 592 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 PABPC1P11940 636 aaKnown RBP8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 ITIH2P19823 946 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 ACVRL1P37023 503 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 OXCT1P55809 520 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 LMAN2Q12907 356 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 MTM1Q13496 603 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 ZNF234Q14588 700 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 STILQ15468 1287 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 ATXN7L2Q5T6C5 722 aaPredicted RBP8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 NADSYN1Q6IA69 706 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 UTS2BQ765I0 119 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 C12orf50Q8NA57 414 aaPredicted RBP8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 OR52K2Q8NGK3 314 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 ARHGEF26Q96DR7 871 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 HSPA12BQ96MM6 686 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 NUP58Q9BVL2 599 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 ZDHHC6Q9H6R6 413 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 C10orf88Q9H8K7 445 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 EURLQ9NYK6 297 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 DOLKQ9UPQ8 538 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 C15orf41Q9Y2V0 281 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 MFHAS1Q9Y4C4 1052 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 MTCL1Q9Y4B5 1905 aaKnown RBP8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 CKAP5Q14008 2032 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 MEI4A8MW99 385 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 KCNU1A8MYU2 1149 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 H0Y3Z8 333 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 DDX3XO00571 662 aaKnown RBP eCLIP8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 SP9P0CG40 484 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 PRLRP16471 622 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 RECQLP46063 649 aaPredicted RBP8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 TUBA1BP68363 451 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 CA9Q16790 459 aa8.03□□□□□ -1.12
LIMCH1-219ENST00000514096 TMEM196Q5HYL7 178 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms