RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 QKIQ96PU8 341 aaKnown RBP eCLIP9.95□□□□□ -0.825e-9■■■□□ 17.1
TOPBP1-209ENST00000513818 FAM129BQ96TA1 746 aa9.95□□□□□ -0.82
TOPBP1-209ENST00000513818 CEP44Q9C0F1 390 aa9.95□□□□□ -0.82
TOPBP1-209ENST00000513818 RSPH9Q9H1X1 276 aaPredicted RBP9.95□□□□□ -0.82
TOPBP1-209ENST00000513818 PRDM16Q9HAZ2 1276 aa9.95□□□□□ -0.82
TOPBP1-209ENST00000513818 HECAQ9UBI9 543 aaPredicted RBP9.95□□□□□ -0.82
TOPBP1-209ENST00000513818 EBF1Q9UH73 591 aa9.95□□□□□ -0.82
TOPBP1-209ENST00000513818 FBXO4Q9UKT5 387 aa9.95□□□□□ -0.82
TOPBP1-209ENST00000513818 ZKSCAN5Q9Y2L8 839 aa9.95□□□□□ -0.82
TOPBP1-209ENST00000513818 JRKLQ9Y4A0 524 aa9.95□□□□□ -0.82
TOPBP1-209ENST00000513818 WASF2Q9Y6W5 498 aa9.95□□□□□ -0.82
TOPBP1-209ENST00000513818 A0A1W2PP55 124 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 TARSL2A2RTX5 802 aaKnown RBP9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 KPNA3O00505 521 aaPredicted RBP9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 MCF2LO15068 1137 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 MATN3O15232 486 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 LEFTY1O75610 366 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 TJP3O95049 919 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 GSRP00390 522 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 JCHAINP01591 159 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 FGGP02679 453 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 UGT2B4P06133 528 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 RBL1P28749 1068 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 CHRNA3P32297 505 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 EIF3EP60228 445 aaKnown RBP9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 SNRPD1P62314 119 aaKnown RBP9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 DSC2Q02487 901 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 SLC20A2Q08357 652 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 ITKQ08881 620 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 SNX1Q13596 522 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 E2F5Q15329 346 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 SIX1Q15475 284 aaPredicted RBP9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 CST6Q15828 149 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 INO80DQ53TQ3 878 aaPredicted RBP9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 MARC1Q5VT66 337 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 TIGD7Q6NT04 549 aaPredicted RBP9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 AADATQ8N5Z0 425 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 DEFB119Q8N690 84 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 PIP4K2CQ8TBX8 421 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 GANCQ8TET4 914 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 NSMCE1Q8WV22 266 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 TFB1MQ8WVM0 346 aaKnown RBP9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 C1orf54Q8WWF1 131 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 MAML1Q92585 1016 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 ARRDC3Q96B67 414 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 CAPZA3Q96KX2 299 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 CCDC114Q96M63 670 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 ZNF599Q96NL3 588 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 TSGA13Q96PP4 275 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 OSBPL9Q96SU4 736 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 RBM22Q9NW64 420 aaKnown RBP eCLIP9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 SEPT3Q9UH03 358 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 IL36AQ9UHA7 158 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 SNX12Q9UMY4 172 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 MYO15AQ9UKN7 3530 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 USP34Q70CQ2 3546 aa9.94□□□□□ -0.82
TOPBP1-209ENST00000513818 PRR23AA6NEV1 266 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 RNASEH2AO75792 299 aaKnown RBP9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 NEBLO76041 1014 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 DNTTP04053 509 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 PRKCGP05129 697 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 RBP3P10745 1247 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 ACADMP11310 421 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 CCNB1P14635 433 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 CCNCP24863 283 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 MSNP26038 577 aaKnown RBP9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 PTPN3P26045 913 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 SLC8A1P32418 973 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 NR2C2P49116 596 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 SCNN1BP51168 640 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 TPMTP51580 245 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 IFI35P80217 286 aaPredicted RBP9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 SEMG2Q02383 582 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 CNTN1Q12860 1018 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 IHHQ14623 411 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 RFTN1Q14699 578 aaPredicted RBP9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 LPAL2Q16609 132 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 LONRF2Q1L5Z9 754 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 MYLK3Q32MK0 819 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 SLC45A4Q5BKX6 768 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 DARS2Q6PI48 645 aaKnown RBP9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 SYT10Q6XYQ8 523 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 PARS2Q7L3T8 475 aaKnown RBP9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 ARMCX6Q7L4S7 300 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 SRLQ86TD4 932 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 WDR5BQ86VZ2 330 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 LONP2Q86WA8 852 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 ZSWIM9Q86XI8 627 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 HDDC3Q8N4P3 179 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 CAMKK1Q8N5S9 505 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 TEX26Q8N6G2 289 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 CNTD1Q8N815 330 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 CASKIN2Q8WXE0 1202 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 ISG20Q96AZ6 181 aaKnown RBP9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 KLHL32Q96NJ5 620 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 AGAP3Q96P47 875 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 PSKH2Q96QS6 385 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 NAPGQ99747 312 aaPredicted RBP9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 SEMA3CQ99985 751 aa9.93□□□□□ -0.82
TOPBP1-209ENST00000513818 MGME1Q9BQP7 344 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms