RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 COQ10BQ9H8M1 238 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 IRAK4Q9NWZ3 460 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 GMPR2Q9P2T1 348 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 BCAP29Q9UHQ4 241 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 FBXW11Q9UKB1 542 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 POLR2AP24928 1970 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 C7orf72A4D263 438 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 BCAS2O75934 225 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 TNFAIP8O95379 198 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 APOA4P06727 396 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 STMN1P16949 149 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 PCSK6P29122 969 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 NSUN2Q08J23 767 aaKnown RBP eCLIP9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 PPP1R3AQ16821 1122 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 NAPEPLDQ6IQ20 393 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 ALKAL1Q6UXT8 129 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 AEBP2Q6ZN18 517 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 TRIM67Q6ZTA4 783 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 EGFL6Q8IUX8 553 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 CEP70Q8NHQ1 597 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 LRTOMTQ8WZ04 291 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 TRPC7Q9HCX4 862 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 RAB26Q9ULW5 256 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 SNX13Q9Y5W8 968 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 SDHDO14521 159 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 CXCL11O14625 94 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 ACOT8O14734 319 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 H2AFYO75367 372 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 GPC4O75487 556 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 ASLP04424 464 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 KCNA5P22460 613 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 CHRNA4P43681 627 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 DAOAP59103 153 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 PRPSAP1Q14558 356 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 B3GNT6Q6ZMB0 384 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 SETD3Q86TU7 594 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 HEXDCQ8WVB3 486 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 POMKQ9H5K3 350 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 CAAP1Q9H8G2 361 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 LIN28AQ9H9Z2 209 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 PREBQ9HCU5 417 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 TNFRSF12AQ9NP84 129 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 GDAP2Q9NXN4 497 aa9.37□□□□□ -0.91
LIMCH1-215ENST00000512632 PRSS51A0A1B0GVH4 220 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 MEIS3P2A8K0S8 358 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 DYNC1LI2O43237 492 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 AP1G1O43747 822 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 SMPD1P17405 629 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 EPHX2P34913 555 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 SLC12A2P55011 1212 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 RAB10P61026 200 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 MGAT5BQ3V5L5 792 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 SV2CQ496J9 727 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 NOMO2Q5JPE7 1267 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 TICAM1Q8IUC6 712 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 MYO1HQ8N1T3 1032 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 CPSF7Q8N684 471 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 OR6J1Q8NGC5 347 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 LPGAT1Q92604 370 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 PPWD1Q96BP3 646 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 ZNF512Q96ME7 567 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 SLC2A13Q96QE2 648 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 SMOQ99835 787 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 SLC39A3Q9BRY0 314 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 FICDQ9BVA6 458 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 CRTAC1Q9NQ79 661 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 VTI1BQ9UEU0 232 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 TRHDEQ9UKU6 1024 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 TARM1B6A8C7 271 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 DARSP14868 501 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 AFF1P51825 1210 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 ARL13BQ3SXY8 428 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 ZNF470Q6ECI4 717 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 OR9I1Q8NGQ6 314 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 TMIGD2Q96BF3 282 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 ATXN10Q9UBB4 475 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 AP4S1Q9Y587 144 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 ERI2A8K979 691 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 GPR32O75388 356 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 CKMT2P17540 419 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 RPL10P27635 214 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 NME5P56597 212 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 SEMA3BQ13214 749 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 PCSK7Q16549 785 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 ZNF789Q5FWF6 425 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 RBM20Q5T481 1227 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 PKN3Q6P5Z2 889 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 ANKRD13AQ8IZ07 590 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 TRIML2Q8N7C3 387 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 TMEM102Q8N9M5 508 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 ZMIZ2Q8NF64 920 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 HDAC11Q96DB2 347 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 GPR78Q96P69 363 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 SLC29A1Q99808 456 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 CIB1Q99828 191 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 ZNF385DQ9H6B1 395 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 PRDM16Q9HAZ2 1276 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 NCKIPSDQ9NZQ3 722 aa9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 HEMK1Q9Y5R4 338 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-215ENST00000512632 CEP350Q5VT06 3117 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms