RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 PRRG3Q9BZD7 231 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 UPF3AQ9H1J1 476 aaKnown RBP12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 EMCNQ9ULC0 261 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 ZNF652Q9Y2D9 606 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 AP3M1Q9Y2T2 418 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 PSME4Q14997 1843 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 HMX2A2RU54 273 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 FAM25AB3EWG3 89 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 FAM25CB3EWG5 89 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 FAM25GB3EWG6 89 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 PAPSS1O43252 624 aaPredicted RBP12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 SNAP29O95721 258 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 CPNE6O95741 557 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 MMP8P22894 467 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 SERPINB10P48595 397 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 PPP5CP53041 499 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 OR2B6P58173 313 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 IL1RL1Q01638 556 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 SELPLGQ14242 412 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 AGAP6Q5VW22 663 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 DRICH1Q6PGQ1 229 aaPredicted RBP12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 CACTIN-AS1Q8N1I8 211 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 AFAP1L2Q8N4X5 818 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 DEPDC1BQ8WUY9 529 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 SHC3Q92529 594 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 GTF2H4Q92759 462 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 SEMA4DQ92854 862 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 NKD2Q969F2 451 aaPredicted RBP12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 TBATAQ96M53 351 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 AGAP4Q96P64 663 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 TM9SF2Q99805 663 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 KCTD14Q9BQ13 255 aaPredicted RBP12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 MCMBPQ9BTE3 642 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 VPS28Q9UK41 221 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 HCN4Q9Y3Q4 1203 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 FADS2P1A8MWK0 482 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 F8VP50 259 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 TRIM77I1YAP6 450 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 AP3D1O14617 1153 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 AXIN1O15169 862 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 PLIN3O60664 434 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 UGT2B11O75310 529 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 OR7A10O76100 309 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 ALOX12P18054 663 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 IL12AP29459 219 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 NAB1Q13506 487 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 COLEC12Q5KU26 742 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 XAF1Q6GPH4 301 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 GK5Q6ZS86 529 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 LINC00523Q86TU6 105 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 EPHX4Q8IUS5 362 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 SLFN12Q8IYM2 578 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 ANKFN1Q8N957 763 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 FAM84AQ96KN4 292 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 C17orf62Q9BQA9 187 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 ADAMTS10Q9H324 1103 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 TIGARQ9NQ88 270 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 DPP3Q9NY33 737 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 PRORSD1PA6NEY8 169 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 TRIM64A6NGJ6 449 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 PTGES3LE9PB15 166 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 SPATA31C1P0DKV0 1188 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 HDCP19113 662 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 ATP2B4P23634 1241 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 DPYSL3Q14195 570 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 HIST2H2ACQ16777 129 aaPredicted RBP12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 PTPN20Q4JDL3 420 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 TFDP3Q5H9I0 405 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 KCNT1Q5JUK3 1230 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 SLC22A15Q8IZD6 547 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 MFSD2AQ8NA29 543 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 OR6Q1Q8NGQ2 317 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 POMGNT1Q8WZA1 660 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 DDX1Q92499 740 aaKnown RBP12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 SLC39A13Q96H72 371 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 CNDP2Q96KP4 475 aaKnown RBP12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 MUS81Q96NY9 551 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 PI4K2AQ9BTU6 479 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 BEX2Q9BXY8 128 aa12.18□□□□□ -0.46
LIMCH1-213ENST00000511496 hCG_1818297A0A087WSY0 165 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 HEATR9A2RTY3 570 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 KRT87PA6NCN2 255 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 NOS1APO75052 506 aaPredicted RBP12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 UPK1BO75841 260 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 NDST3O95803 873 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 GLDCP23378 1020 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 ADORA2AP29274 412 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 CAPGP40121 348 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 RAP1GAP2Q684P5 730 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 CATSPER4Q7RTX7 472 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 ADAMTSL2Q86TH1 951 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 MAPKAPK5Q8IW41 473 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 ANKRD13AQ8IZ07 590 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 PROX1Q92786 737 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 VTI1AQ96AJ9 217 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 SCPEP1Q9HB40 452 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 WASH6PQ9NQA3 447 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 INMTO95050 263 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 MT-ND1P03886 318 aa12.17□□□□□ -0.46
LIMCH1-213ENST00000511496 CFHP08603 1231 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms