RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 RPS6KA1Q15418 735 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 TAZQ16635 292 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 WDR45BQ5MNZ6 344 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 SEL1L2Q5TEA6 688 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 KAZNQ674X7 775 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 MFSD7Q6UXD7 560 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 DPY19L3Q6ZPD9 716 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 CACUL1Q86Y37 369 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 HDDC3Q8N4P3 179 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 GPR161Q8N6U8 529 aaKnown RBP9.28□□□□□ -0.92
NUP54-207ENST00000508583 PQLC3Q8N755 202 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 PLD5Q8N7P1 536 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 TTC13Q8NBP0 860 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 CCNYQ8ND76 341 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 HCAR2Q8TDS4 363 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 RAB7BQ96AH8 199 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 ZNF641Q96N77 438 aaPredicted RBP9.28□□□□□ -0.92
NUP54-207ENST00000508583 PSKH2Q96QS6 385 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 FAM129BQ96TA1 746 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 CPEB1Q9BZB8 566 aaKnown RBP9.28□□□□□ -0.92
NUP54-207ENST00000508583 DUSP15Q9H1R2 295 aaPredicted RBP9.28□□□□□ -0.92
NUP54-207ENST00000508583 TNKS2Q9H2K2 1166 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 GOLPH3Q9H4A6 298 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 ZDHHC6Q9H6R6 413 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 ATP13A3Q9H7F0 1226 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 ETNK2Q9NVF9 386 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 DTLQ9NZJ0 730 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 NCDNQ9UBB6 729 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 HEY1Q9Y5J3 304 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 CAPN6Q9Y6Q1 641 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 VPS13AQ96RL7 3174 aa9.28□□□□□ -0.92
NUP54-207ENST00000508583 USP34Q70CQ2 3546 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 EML5Q05BV3 1969 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 hCG_1818297A0A087WSY0 165 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.27□□□□□ -0.93
NUP54-207ENST00000508583 MEI4A8MW99 385 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 HACD1B0YJ81 288 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 APOC4-APOC2K7ER74 178 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 KRIT1O00522 736 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 MATN3O15232 486 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 MID1O15344 667 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 KIF5CO60282 957 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 MAFKO60675 156 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 ZNF821O75541 412 aaPredicted RBP9.27□□□□□ -0.93
NUP54-207ENST00000508583 LEFTY1O75610 366 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 SEMA4FO95754 770 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 FTCDO95954 541 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 CD160O95971 181 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 APOC2P02655 101 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 RETP07949 1114 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 KRT10P13645 584 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 VAV1P15498 845 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 GNSP15586 552 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 XPAP23025 273 aaPredicted RBP9.27□□□□□ -0.93
NUP54-207ENST00000508583 SERPINA4P29622 427 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 NEK3P51956 506 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 POLR2LP62875 67 aaKnown RBP9.27□□□□□ -0.93
NUP54-207ENST00000508583 DYNLT1P63172 113 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 GBE1Q04446 702 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 PPIDQ08752 370 aaKnown RBP9.27□□□□□ -0.93
NUP54-207ENST00000508583 MYLK3Q32MK0 819 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 PLK5Q496M5 336 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 ZNF805Q5CZA5 627 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 ARSIQ5FYB1 569 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 LYSMD4Q5XG99 296 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 PMS2CLQ68D20 193 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 NEK5Q6P3R8 708 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 FBXL19Q6PCT2 694 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 BRAT1Q6PJG6 821 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 BBS12Q6ZW61 710 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 CCDC13Q8IYE1 715 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 FAM160A2Q8N612 972 aaPredicted RBP9.27□□□□□ -0.93
NUP54-207ENST00000508583 PAF1Q8N7H5 531 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 OR2T34Q8NGX1 318 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 GRIN3AQ8TCU5 1115 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 TFB1MQ8WVM0 346 aaKnown RBP9.27□□□□□ -0.93
NUP54-207ENST00000508583 RLN3Q8WXF3 142 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 RUBCNQ92622 972 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 KRT35Q92764 455 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 TOE1Q96GM8 510 aaKnown RBP9.27□□□□□ -0.93
NUP54-207ENST00000508583 HES6Q96HZ4 224 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 VAT1Q99536 393 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 HINFPQ9BQA5 517 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 MGME1Q9BQP7 344 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 HDAC8Q9BY41 377 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 OSBPL8Q9BZF1 889 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 POLR1EQ9GZS1 481 aaKnown RBP9.27□□□□□ -0.93
NUP54-207ENST00000508583 SLC6A17Q9H1V8 727 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 MTG2Q9H4K7 406 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 PREBQ9HCU5 417 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 WSB2Q9NYS7 404 aaPredicted RBP9.27□□□□□ -0.93
NUP54-207ENST00000508583 SUSD2Q9UGT4 822 aa9.27□□□□□ -0.93
NUP54-207ENST00000508583 SHROOM3Q8TF72 1996 aa9.26□□□□□ -0.93
NUP54-207ENST00000508583 A0A1W2PP55 124 aa9.26□□□□□ -0.93
NUP54-207ENST00000508583 PRR5-ARHGAP8B1AHC4 643 aa9.26□□□□□ -0.93
NUP54-207ENST00000508583 SOCS5O75159 536 aa9.26□□□□□ -0.93
NUP54-207ENST00000508583 STK10O94804 968 aaKnown RBP9.26□□□□□ -0.93
NUP54-207ENST00000508583 CCNB1P14635 433 aa9.26□□□□□ -0.93
NUP54-207ENST00000508583 PLA2G5P39877 138 aa9.26□□□□□ -0.93
NUP54-207ENST00000508583 TNNT3P45378 269 aaPredicted RBP9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms