RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 DCBLD1Q8N8Z6 715 aa11.74□□□□□ -0.53
HMGCS1-204ENST00000507293 FAM174AQ8TBP5 190 aa11.74□□□□□ -0.53
HMGCS1-204ENST00000507293 FAM172AQ8WUF8 416 aa11.74□□□□□ -0.53
HMGCS1-204ENST00000507293 ARHGEF2Q92974 986 aaKnown RBP11.74□□□□□ -0.53
HMGCS1-204ENST00000507293 TBC1D31Q96DN5 1066 aa11.74□□□□□ -0.53
HMGCS1-204ENST00000507293 IFT43Q96FT9 208 aa11.74□□□□□ -0.53
HMGCS1-204ENST00000507293 FEM1CQ96JP0 617 aa11.74□□□□□ -0.53
HMGCS1-204ENST00000507293 BBC3Q96PG8 261 aaPredicted RBP11.74□□□□□ -0.53
HMGCS1-204ENST00000507293 PCDHB18PQ96TA0 734 aa11.74□□□□□ -0.53
HMGCS1-204ENST00000507293 OSBPL2Q9H1P3 480 aa11.74□□□□□ -0.53
HMGCS1-204ENST00000507293 GPR27Q9NS67 375 aa11.74□□□□□ -0.53
HMGCS1-204ENST00000507293 TMEM248Q9NWD8 314 aa11.74□□□□□ -0.53
HMGCS1-204ENST00000507293 DNAJC28Q9NX36 388 aa11.74□□□□□ -0.53
HMGCS1-204ENST00000507293 NLGN3Q9NZ94 848 aa11.74□□□□□ -0.53
HMGCS1-204ENST00000507293 GGT7Q9UJ14 662 aa11.74□□□□□ -0.53
HMGCS1-204ENST00000507293 ITM2BQ9Y287 266 aa11.74□□□□□ -0.53
HMGCS1-204ENST00000507293 SIK3Q9Y2K2 1263 aa11.74□□□□□ -0.53
HMGCS1-204ENST00000507293 HS3ST3A1Q9Y663 406 aa11.74□□□□□ -0.53
HMGCS1-204ENST00000507293 BAHCC1Q9P281 2608 aa11.74□□□□□ -0.53
HMGCS1-204ENST00000507293 ANKRD36A6QL64 1941 aa11.74□□□□□ -0.53
HMGCS1-204ENST00000507293 CXorf51AA0A1B0GTR3 108 aa11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 C16orf96A6NNT2 1141 aa11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 KRIT1O00522 736 aa11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 FPGTO14772 594 aa11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 BRINP1O60477 761 aa11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 RAMP2O60895 175 aa11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 NEBLO76041 1014 aa11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 GSRP00390 522 aa11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 MT-CO3P00414 261 aa11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 PLEKP08567 350 aaPredicted RBP11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 CKMT1AP12532 417 aa11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 UNGP13051 313 aaPredicted RBP11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 GPD1P21695 349 aa11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 EIF2S3P41091 472 aaKnown RBP11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 STAT1P42224 750 aa11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 NSFP46459 744 aaKnown RBP11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 HDAC4P56524 1084 aa11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 GEMIN4P57678 1058 aaKnown RBP11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 PTP4A2Q12974 167 aa11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 FZD2Q14332 565 aa11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 POLD3Q15054 466 aaPredicted RBP11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 ZNF805Q5CZA5 627 aa11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 LRRC69Q6ZNQ3 347 aa11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 PARGQ86W56 976 aa11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 DCP2Q8IU60 420 aaKnown RBP11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 PLPP6Q8IY26 295 aa11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 ZNF548Q8NEK5 533 aaPredicted RBP11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 OR2AP1Q8NGE2 309 aa11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 CENPIQ92674 756 aaPredicted RBP11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 RAB7BQ96AH8 199 aa11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 ISG20Q96AZ6 181 aaKnown RBP11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 APOLD1Q96LR9 279 aa11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 KLF6Q99612 283 aaPredicted RBP11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 SELENOOQ9BVL4 669 aa11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 MAGEH1Q9H213 219 aa11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 HPCAL4Q9UM19 191 aa11.73□□□□□ -0.53
HMGCS1-204ENST00000507293 LRP4O75096 1905 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 LY6G6EA0A0G2JKS1 128 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 SPTY2D1-AS1A0A0U1RR47 76 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 NEMP2A6NFY4 417 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 IGLON5A6NGN9 336 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 H3BM21 787 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 K7ESM1 405 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 NEMP1O14524 444 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 SCAMP1O15126 338 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 SPINT1O43278 529 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 TSPAN6O43657 245 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 KDELR3O43731 214 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 UGT2B4P06133 528 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 KRT3P12035 628 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 NME1P15531 152 aaKnown RBP11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 RFC1P35251 1148 aaPredicted RBP11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 RABIFP47224 123 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 GSCP56915 257 aaPredicted RBP11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 HNRNPKP61978 463 aaKnown RBP eCLIP11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 SNRPD1P62314 119 aaKnown RBP11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 SGCGQ13326 291 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 PDE1CQ14123 709 aaPredicted RBP11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 SYCP1Q15431 976 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 CLEC16AQ2KHT3 1053 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 TPRG1LQ5T0D9 272 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 ATXN7L2Q5T6C5 722 aaPredicted RBP11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 ZSCAN30Q86W11 494 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 ZNF354CQ86Y25 554 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 PHF13Q86YI8 300 aaPredicted RBP11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 FAM181AQ8N9Y4 354 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 SNIP1Q8TAD8 396 aaKnown RBP11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 BAP1Q92560 729 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 NTAN1Q96AB6 310 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 VOPP1Q96AW1 172 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 PCMTD1Q96MG8 357 aaPredicted RBP11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 KLHL32Q96NJ5 620 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 LENG8Q96PV6 779 aaPredicted RBP11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 C1QTNF2Q9BXJ5 285 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 RETREG1Q9H6L5 497 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 LMBRD1Q9NUN5 540 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 FANCLQ9NW38 375 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 ADAM22Q9P0K1 906 aa11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 IPO11Q9UI26 975 aaKnown RBP11.72□□□□□ -0.53
HMGCS1-204ENST00000507293 DAAM1Q9Y4D1 1078 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms