RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 JMJD7P0C870 316 aa16.79■□□□□ 0.28
VIM-208ENST00000497849 ETV5P41161 510 aa16.79■□□□□ 0.28
VIM-208ENST00000497849 YWHAZP63104 245 aaKnown RBP16.79■□□□□ 0.28
VIM-208ENST00000497849 KRT83P78385 493 aa16.79■□□□□ 0.28
VIM-208ENST00000497849 TAF5Q15542 800 aa16.79■□□□□ 0.28
VIM-208ENST00000497849 C5orf22Q49AR2 442 aa16.79■□□□□ 0.28
VIM-208ENST00000497849 C22orf39Q6P5X5 142 aa16.79■□□□□ 0.28
VIM-208ENST00000497849 LINGO4Q6UY18 593 aa16.79■□□□□ 0.28
VIM-208ENST00000497849 SDR16C5Q8N3Y7 309 aa16.79■□□□□ 0.28
VIM-208ENST00000497849 PPP1R16AQ96I34 528 aa16.79■□□□□ 0.28
VIM-208ENST00000497849 TRIM62Q9BVG3 475 aa16.79■□□□□ 0.28
VIM-208ENST00000497849 SRRTQ9BXP5 876 aaKnown RBP16.79■□□□□ 0.28
VIM-208ENST00000497849 SLC4A5Q9BY07 1137 aa16.79■□□□□ 0.28
VIM-208ENST00000497849 ADNPQ9H2P0 1102 aa16.79■□□□□ 0.28
VIM-208ENST00000497849 GULP1Q9UBP9 304 aa16.79■□□□□ 0.28
VIM-208ENST00000497849 HS3ST4Q9Y661 456 aa16.79■□□□□ 0.28
VIM-208ENST00000497849 CREBBPQ92793 2442 aa16.79■□□□□ 0.28
VIM-208ENST00000497849 SYNJ2BP-COX16A0A087WUM0 186 aa16.78■□□□□ 0.28
VIM-208ENST00000497849 A0A1B0GVL5 298 aa16.78■□□□□ 0.28
VIM-208ENST00000497849 CETN3O15182 167 aa16.78■□□□□ 0.28
VIM-208ENST00000497849 AP1G1O43747 822 aa16.78■□□□□ 0.28
VIM-208ENST00000497849 CNTN5O94779 1100 aa16.78■□□□□ 0.28
VIM-208ENST00000497849 RPLP0P05388 317 aaKnown RBP16.78■□□□□ 0.28
VIM-208ENST00000497849 SLC2A3P11169 496 aa16.78■□□□□ 0.28
VIM-208ENST00000497849 PFKFB1P16118 471 aa16.78■□□□□ 0.28
VIM-208ENST00000497849 ITGB7P26010 798 aa16.78■□□□□ 0.28
VIM-208ENST00000497849 L1CAMP32004 1257 aa16.78■□□□□ 0.28
VIM-208ENST00000497849 CCR1P32246 355 aa16.78■□□□□ 0.28
VIM-208ENST00000497849 DPYDQ12882 1025 aa16.78■□□□□ 0.28
VIM-208ENST00000497849 SGCGQ13326 291 aa16.78■□□□□ 0.28
VIM-208ENST00000497849 ARL10Q8N8L6 244 aa16.78■□□□□ 0.28
VIM-208ENST00000497849 KYQ8NBH2 561 aa16.78■□□□□ 0.28
VIM-208ENST00000497849 C2orf49Q9BVC5 232 aaPredicted RBP16.78■□□□□ 0.28
VIM-208ENST00000497849 CPEB1Q9BZB8 566 aaKnown RBP16.78■□□□□ 0.28
VIM-208ENST00000497849 SCAND2PQ9GZW5 306 aaPredicted RBP16.78■□□□□ 0.28
VIM-208ENST00000497849 FAM204AQ9H8W3 233 aa16.78■□□□□ 0.28
VIM-208ENST00000497849 COX16Q9P0S2 106 aa16.78■□□□□ 0.28
VIM-208ENST00000497849 GGT7Q9UJ14 662 aa16.78■□□□□ 0.28
VIM-208ENST00000497849 SDK2Q58EX2 2172 aa16.78■□□□□ 0.28
VIM-208ENST00000497849 C9orf172C9J069 976 aa16.77■□□□□ 0.28
VIM-208ENST00000497849 E5RJQ4 531 aa16.77■□□□□ 0.28
VIM-208ENST00000497849 AGRPO00253 132 aa16.77■□□□□ 0.28
VIM-208ENST00000497849 ENDOD1O94919 500 aa16.77■□□□□ 0.28
VIM-208ENST00000497849 NOS2P35228 1153 aa16.77■□□□□ 0.28
VIM-208ENST00000497849 CASRP41180 1078 aa16.77■□□□□ 0.28
VIM-208ENST00000497849 ACADSBP45954 432 aa16.77■□□□□ 0.28
VIM-208ENST00000497849 CLCN6P51797 869 aa16.77■□□□□ 0.28
VIM-208ENST00000497849 CDH4P55283 916 aa16.77■□□□□ 0.28
VIM-208ENST00000497849 ALFQ53S48 1182 aa16.77■□□□□ 0.28
VIM-208ENST00000497849 DENND1BQ6P3S1 775 aa16.77■□□□□ 0.28
VIM-208ENST00000497849 PARS2Q7L3T8 475 aaKnown RBP16.77■□□□□ 0.28
VIM-208ENST00000497849 FAM26EQ8N5C1 309 aa16.77■□□□□ 0.28
VIM-208ENST00000497849 DENND6BQ8NEG7 585 aa16.77■□□□□ 0.28
VIM-208ENST00000497849 ASB12Q8WXK4 309 aa16.77■□□□□ 0.28
VIM-208ENST00000497849 USP7Q93009 1102 aa16.77■□□□□ 0.28
VIM-208ENST00000497849 SLC35C1Q96A29 364 aa16.77■□□□□ 0.28
VIM-208ENST00000497849 CENPTQ96BT3 561 aa16.77■□□□□ 0.28
VIM-208ENST00000497849 TMEM74Q96NL1 305 aa16.77■□□□□ 0.28
VIM-208ENST00000497849 SLC12A9Q9BXP2 914 aa16.77■□□□□ 0.28
VIM-208ENST00000497849 SLC13A1Q9BZW2 595 aa16.77■□□□□ 0.28
VIM-208ENST00000497849 LRRN3Q9H3W5 708 aa16.77■□□□□ 0.28
VIM-208ENST00000497849 THAP9Q9H5L6 903 aa16.77■□□□□ 0.28
VIM-208ENST00000497849 DDIT4Q9NX09 232 aa16.77■□□□□ 0.28
VIM-208ENST00000497849 SIRPGQ9P1W8 387 aa16.77■□□□□ 0.28
VIM-208ENST00000497849 USP25Q9UHP3 1055 aa16.77■□□□□ 0.28
VIM-208ENST00000497849 HPSEQ9Y251 543 aa16.77■□□□□ 0.28
VIM-208ENST00000497849 LRRK1Q38SD2 2015 aa16.76■□□□□ 0.27
VIM-208ENST00000497849 A0A0D9SEW6 157 aa16.76■□□□□ 0.27
VIM-208ENST00000497849 BLACEA4D250 179 aa16.76■□□□□ 0.27
VIM-208ENST00000497849 RHOCP08134 193 aa16.76■□□□□ 0.27
VIM-208ENST00000497849 IGFALSP35858 605 aa16.76■□□□□ 0.27
VIM-208ENST00000497849 ABL2P42684 1182 aa16.76■□□□□ 0.27
VIM-208ENST00000497849 THOP1P52888 689 aa16.76■□□□□ 0.27
VIM-208ENST00000497849 ZFP36L1Q07352 338 aaKnown RBP16.76■□□□□ 0.27
VIM-208ENST00000497849 PTK2BQ14289 1009 aa16.76■□□□□ 0.27
VIM-208ENST00000497849 HIST2H2BCQ6DN03 193 aa16.76■□□□□ 0.27
VIM-208ENST00000497849 TMEM110Q86TL2 294 aa16.76■□□□□ 0.27
VIM-208ENST00000497849 ZSCAN30Q86W11 494 aa16.76■□□□□ 0.27
VIM-208ENST00000497849 SMYD4Q8IYR2 804 aaPredicted RBP16.76■□□□□ 0.27
VIM-208ENST00000497849 DEFB106AQ8N104 65 aa16.76■□□□□ 0.27
VIM-208ENST00000497849 DCAF4L2Q8NA75 395 aa16.76■□□□□ 0.27
VIM-208ENST00000497849 PCDH19Q8TAB3 1148 aa16.76■□□□□ 0.27
VIM-208ENST00000497849 STK32AQ8WU08 396 aa16.76■□□□□ 0.27
VIM-208ENST00000497849 CCDC47Q96A33 483 aaKnown RBP16.76■□□□□ 0.27
VIM-208ENST00000497849 ITM2BQ9Y287 266 aa16.76■□□□□ 0.27
VIM-208ENST00000497849 PCDHB11Q9Y5F2 797 aa16.76■□□□□ 0.27
VIM-208ENST00000497849 LRP4O75096 1905 aa16.76■□□□□ 0.27
VIM-208ENST00000497849 ITPR2Q14571 2701 aa16.75■□□□□ 0.27
VIM-208ENST00000497849 A0A1W2PQ27 194 aa16.75■□□□□ 0.27
VIM-208ENST00000497849 A0A1W2PQ64 194 aa16.75■□□□□ 0.27
VIM-208ENST00000497849 A0A1W2PQC6 194 aa16.75■□□□□ 0.27
VIM-208ENST00000497849 TSPAN6O43657 245 aa16.75■□□□□ 0.27
VIM-208ENST00000497849 GADD45BO75293 160 aaPredicted RBP16.75■□□□□ 0.27
VIM-208ENST00000497849 PAGE1O75459 146 aa16.75■□□□□ 0.27
VIM-208ENST00000497849 RECQLP46063 649 aaPredicted RBP16.75■□□□□ 0.27
VIM-208ENST00000497849 POLE2P56282 527 aa16.75■□□□□ 0.27
VIM-208ENST00000497849 CDK17Q00537 523 aa16.75■□□□□ 0.27
VIM-208ENST00000497849 KCNAB2Q13303 367 aa16.75■□□□□ 0.27
VIM-208ENST00000497849 FAXCQ5TGI0 409 aa16.75■□□□□ 0.27
VIM-208ENST00000497849 BORAQ6PGQ7 559 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms