RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 CCR5P51681 352 aa16.64■□□□□ 0.25
SF3A1-209ENST00000496189 AFF3P51826 1226 aaKnown RBP16.64■□□□□ 0.25
SF3A1-209ENST00000496189 NEK3P51956 506 aa16.64■□□□□ 0.25
SF3A1-209ENST00000496189 IRX4P78413 519 aa16.64■□□□□ 0.25
SF3A1-209ENST00000496189 SLC45A4Q5BKX6 768 aa16.64■□□□□ 0.25
SF3A1-209ENST00000496189 TMCO4Q5TGY1 634 aa16.64■□□□□ 0.25
SF3A1-209ENST00000496189 STPG1Q5TH74 334 aa16.64■□□□□ 0.25
SF3A1-209ENST00000496189 ERN2Q76MJ5 926 aaKnown RBP16.64■□□□□ 0.25
SF3A1-209ENST00000496189 PRPF39Q86UA1 669 aaKnown RBP16.64■□□□□ 0.25
SF3A1-209ENST00000496189 PAF1Q8N7H5 531 aa16.64■□□□□ 0.25
SF3A1-209ENST00000496189 CHST14Q8NCH0 376 aa16.64■□□□□ 0.25
SF3A1-209ENST00000496189 DESI2Q9BSY9 194 aa16.64■□□□□ 0.25
SF3A1-209ENST00000496189 GTPBP2Q9BX10 602 aaKnown RBP16.64■□□□□ 0.25
SF3A1-209ENST00000496189 ZDHHC5Q9C0B5 715 aa16.64■□□□□ 0.25
SF3A1-209ENST00000496189 SLC39A8Q9C0K1 460 aa16.64■□□□□ 0.25
SF3A1-209ENST00000496189 HAUS2Q9NVX0 235 aa16.64■□□□□ 0.25
SF3A1-209ENST00000496189 ARHGAP33O14559 1287 aa16.63■□□□□ 0.25
SF3A1-209ENST00000496189 SLC30A4O14863 429 aa16.63■□□□□ 0.25
SF3A1-209ENST00000496189 BUB1BO60566 1050 aaPredicted RBP16.63■□□□□ 0.25
SF3A1-209ENST00000496189 PRAMEF11O60813 436 aa16.63■□□□□ 0.25
SF3A1-209ENST00000496189 PALMO75781 387 aa16.63■□□□□ 0.25
SF3A1-209ENST00000496189 CD160O95971 181 aa16.63■□□□□ 0.25
SF3A1-209ENST00000496189 CTSLP07711 333 aa16.63■□□□□ 0.25
SF3A1-209ENST00000496189 ENGP17813 658 aa16.63■□□□□ 0.25
SF3A1-209ENST00000496189 AMPD1P23109 780 aa16.63■□□□□ 0.25
SF3A1-209ENST00000496189 ITGB7P26010 798 aa16.63■□□□□ 0.25
SF3A1-209ENST00000496189 RENBPP51606 427 aa16.63■□□□□ 0.25
SF3A1-209ENST00000496189 IL10RBQ08334 325 aa16.63■□□□□ 0.25
SF3A1-209ENST00000496189 RFTN1Q14699 578 aaPredicted RBP16.63■□□□□ 0.25
SF3A1-209ENST00000496189 MYLK3Q32MK0 819 aa16.63■□□□□ 0.25
SF3A1-209ENST00000496189 CFAP58Q5T655 872 aa16.63■□□□□ 0.25
SF3A1-209ENST00000496189 LRRC38Q5VT99 294 aa16.63■□□□□ 0.25
SF3A1-209ENST00000496189 C11orf63Q6NUN7 778 aa16.63■□□□□ 0.25
SF3A1-209ENST00000496189 IL27RAQ6UWB1 636 aa16.63■□□□□ 0.25
SF3A1-209ENST00000496189 LRRC49Q8IUZ0 686 aa16.63■□□□□ 0.25
SF3A1-209ENST00000496189 RHOT1Q8IXI2 618 aa16.63■□□□□ 0.25
SF3A1-209ENST00000496189 ATPAF2Q8N5M1 289 aa16.63■□□□□ 0.25
SF3A1-209ENST00000496189 RMDN1Q96DB5 314 aa16.63■□□□□ 0.25
SF3A1-209ENST00000496189 ZNF670Q9BS34 389 aa16.63■□□□□ 0.25
SF3A1-209ENST00000496189 CINPQ9BW66 212 aaPredicted RBP16.63■□□□□ 0.25
SF3A1-209ENST00000496189 HDAC8Q9BY41 377 aa16.63■□□□□ 0.25
SF3A1-209ENST00000496189 IPO11Q9UI26 975 aaKnown RBP16.63■□□□□ 0.25
SF3A1-209ENST00000496189 TFR2Q9UP52 801 aa16.63■□□□□ 0.25
SF3A1-209ENST00000496189 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.63■□□□□ 0.25
SF3A1-209ENST00000496189 ACTL7AQ9Y615 435 aa16.63■□□□□ 0.25
SF3A1-209ENST00000496189 WASF2Q9Y6W5 498 aa16.63■□□□□ 0.25
SF3A1-209ENST00000496189 CHD5Q8TDI0 1954 aa16.62■□□□□ 0.25
SF3A1-209ENST00000496189 RCCD1A6NED2 376 aa16.62■□□□□ 0.25
SF3A1-209ENST00000496189 NEMP1O14524 444 aa16.62■□□□□ 0.25
SF3A1-209ENST00000496189 KRT86O43790 486 aa16.62■□□□□ 0.25
SF3A1-209ENST00000496189 ZNF821O75541 412 aaPredicted RBP16.62■□□□□ 0.25
SF3A1-209ENST00000496189 PCDH8O95206 1070 aa16.62■□□□□ 0.25
SF3A1-209ENST00000496189 CCDC175P0C221 793 aa16.62■□□□□ 0.25
SF3A1-209ENST00000496189 COMTP21964 271 aa16.62■□□□□ 0.25
SF3A1-209ENST00000496189 XPAP23025 273 aaPredicted RBP16.62■□□□□ 0.25
SF3A1-209ENST00000496189 MAPK8P45983 427 aa16.62■□□□□ 0.25
SF3A1-209ENST00000496189 ZNF235Q14590 738 aa16.62■□□□□ 0.25
SF3A1-209ENST00000496189 SETMARQ53H47 684 aaPredicted RBP16.62■□□□□ 0.25
SF3A1-209ENST00000496189 AGBL4Q5VU57 503 aa16.62■□□□□ 0.25
SF3A1-209ENST00000496189 TXNRD3NBQ6F5E7 133 aa16.62■□□□□ 0.25
SF3A1-209ENST00000496189 NEK5Q6P3R8 708 aa16.62■□□□□ 0.25
SF3A1-209ENST00000496189 DAAM2Q86T65 1068 aa16.62■□□□□ 0.25
SF3A1-209ENST00000496189 OR6K2Q8NGY2 324 aa16.62■□□□□ 0.25
SF3A1-209ENST00000496189 TPCN2Q8NHX9 752 aa16.62■□□□□ 0.25
SF3A1-209ENST00000496189 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.62■□□□□ 0.25
SF3A1-209ENST00000496189 RAB7BQ96AH8 199 aa16.62■□□□□ 0.25
SF3A1-209ENST00000496189 ZNF830Q96NB3 372 aaPredicted RBP16.62■□□□□ 0.25
SF3A1-209ENST00000496189 ZNF599Q96NL3 588 aa16.62■□□□□ 0.25
SF3A1-209ENST00000496189 MAK16Q9BXY0 300 aaKnown RBP16.62■□□□□ 0.25
SF3A1-209ENST00000496189 KLC2Q9H0B6 622 aa16.62■□□□□ 0.25
SF3A1-209ENST00000496189 CAPN10Q9HC96 672 aa16.62■□□□□ 0.25
SF3A1-209ENST00000496189 AASDHPPTQ9NRN7 309 aa16.62■□□□□ 0.25
SF3A1-209ENST00000496189 DDX56Q9NY93 547 aaKnown RBP16.62■□□□□ 0.25
SF3A1-209ENST00000496189 DLL3Q9NYJ7 618 aa16.62■□□□□ 0.25
SF3A1-209ENST00000496189 ADGRG1Q9Y653 693 aa16.62■□□□□ 0.25
SF3A1-209ENST00000496189 ALG6Q9Y672 507 aa16.62■□□□□ 0.25
SF3A1-209ENST00000496189 A0A1W2PPC4 97 aa16.61■□□□□ 0.25
SF3A1-209ENST00000496189 LRRD1A4D1F6 860 aa16.61■□□□□ 0.25
SF3A1-209ENST00000496189 J3KR12 359 aa16.61■□□□□ 0.25
SF3A1-209ENST00000496189 PLK4O00444 970 aa16.61■□□□□ 0.25
SF3A1-209ENST00000496189 OPHN1O60890 802 aa16.61■□□□□ 0.25
SF3A1-209ENST00000496189 NEBLO76041 1014 aa16.61■□□□□ 0.25
SF3A1-209ENST00000496189 CER1O95813 267 aa16.61■□□□□ 0.25
SF3A1-209ENST00000496189 UGT2B4P06133 528 aa16.61■□□□□ 0.25
SF3A1-209ENST00000496189 GRIA4P48058 902 aa16.61■□□□□ 0.25
SF3A1-209ENST00000496189 METAP1P53582 386 aa16.61■□□□□ 0.25
SF3A1-209ENST00000496189 C21orf59P57076 290 aa16.61■□□□□ 0.25
SF3A1-209ENST00000496189 TAS2R40P59535 323 aa16.61■□□□□ 0.25
SF3A1-209ENST00000496189 RACK1P63244 317 aaKnown RBP16.61■□□□□ 0.25
SF3A1-209ENST00000496189 DPYSL3Q14195 570 aa16.61■□□□□ 0.25
SF3A1-209ENST00000496189 UAP1L1Q3KQV9 507 aa16.61■□□□□ 0.25
SF3A1-209ENST00000496189 ZNF805Q5CZA5 627 aa16.61■□□□□ 0.25
SF3A1-209ENST00000496189 ATXN7L2Q5T6C5 722 aaPredicted RBP16.61■□□□□ 0.25
SF3A1-209ENST00000496189 AFMIDQ63HM1 303 aa16.61■□□□□ 0.25
SF3A1-209ENST00000496189 GDPD4Q6W3E5 623 aa16.61■□□□□ 0.25
SF3A1-209ENST00000496189 DGLUCYQ7Z3D6 616 aa16.61■□□□□ 0.25
SF3A1-209ENST00000496189 ZSCAN30Q86W11 494 aa16.61■□□□□ 0.25
SF3A1-209ENST00000496189 TRIM69Q86WT6 500 aa16.61■□□□□ 0.25
SF3A1-209ENST00000496189 ARHGAP12Q8IWW6 846 aa16.61■□□□□ 0.25
SF3A1-209ENST00000496189 SYCE1Q8N0S2 351 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms