RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 EFCAB3Q8N7B9 438 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PKD2L2Q9NZM6 624 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 AURKCQ9UQB9 309 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 MYRFQ9Y2G1 1151 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 AP4B1Q9Y6B7 739 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 BRCA2P51587 3418 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 LRIG2O94898 1065 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 GFAPP14136 432 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SLC25A11Q02978 314 aaKnown RBP10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TAF10Q12962 218 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TUSC3Q13454 348 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 BTG3Q14201 252 aaPredicted RBP10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 NOMO1Q15155 1222 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SLC1A5Q15758 541 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PPM1JQ5JR12 505 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ASRGL1Q7L266 308 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ATP6V1E2Q96A05 226 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 MFSD3Q96ES6 412 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 BCO2Q9BYV7 579 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 NMUR2Q9GZQ4 415 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 BRD8Q9H0E9 1235 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 COPS7BQ9H9Q2 264 aaPredicted RBP10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ARHGEF4Q9NR80 690 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 DTLQ9NZJ0 730 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 CRYL1Q9Y2S2 319 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 DOCK5Q9H7D0 1870 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ZNF839A8K0R7 811 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ITGAVP06756 1048 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TBX4P57082 545 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 MRPS22P82650 360 aaKnown RBP10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 NR1D2Q14995 579 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PDCD4Q53EL6 469 aaKnown RBP10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PACS1Q6VY07 963 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TAC4Q86UU9 113 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ALYREFQ86V81 257 aaKnown RBP10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 RNF148Q8N7C7 305 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 HSFY1Q96LI6 401 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TM6SF2Q9BZW4 377 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ABCG8Q9H221 673 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ZNF395Q9H8N7 513 aaPredicted RBP10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 MARCH2Q9P0N8 246 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SCHIP1Q9P0W5 487 aaPredicted RBP10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 GMIPQ9P107 970 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SNX13Q9Y5W8 968 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SNX5Q9Y5X3 404 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 A0A0J9YVX5 310 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TYW5A2RUC4 315 aaKnown RBP10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 CNOT3O75175 753 aaKnown RBP10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ITGB6P18564 788 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 AQP4P55087 323 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TRAF2Q12933 501 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 LRRC38Q5VT99 294 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ZNF280DQ6N043 979 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 NT5DC4Q86YG4 428 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 IGDCC3Q8IVU1 814 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 CARNMT1Q8N4J0 409 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TTC9BQ8N6N2 239 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SLC35F5Q8WV83 523 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 MCRS1Q96EZ8 462 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SRPK1Q96SB4 655 aaKnown RBP10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SH3GL1Q99961 368 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 OMDQ99983 421 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 NOL6Q9H6R4 1146 aaKnown RBP10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ZBTB24O43167 697 aaPredicted RBP10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PAGE1O75459 146 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 MTA2O94776 668 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 BCL10O95999 233 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ALDH1A1P00352 501 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 NELFEP18615 380 aaKnown RBP10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PEX2P28328 305 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 CHRNA4P43681 627 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 NME5P56597 212 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 WDR4P57081 412 aaKnown RBP10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 NRF1Q16656 503 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SLC25A52Q3SY17 297 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 LRRC8EQ6NSJ5 796 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 AAGABQ6PD74 315 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 KLHDC10Q6PID8 442 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 C16orf89Q6UX73 402 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SLC26A11Q86WA9 606 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 LGI2Q8N0V4 545 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 BBS5Q8N3I7 341 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 CDC26Q8NHZ8 85 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SEPT8Q92599 483 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PHF21BQ96EK2 531 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 MOCOSQ96EN8 888 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 S100A14Q9HCY8 104 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 CHRAC1Q9NRG0 131 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 MRGBPQ9NV56 204 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SYBUQ9NX95 663 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TMED5Q9Y3A6 229 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PCDHB5Q9Y5E4 795 aa10.88□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 RREB1Q92766 1687 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 MAGEB3O15480 346 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 MBL2P11226 248 aaPredicted RBP10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 YWHAQP27348 245 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PLIN5Q00G26 463 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PTP4A2Q12974 167 aa10.87□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 NADK2Q4G0N4 442 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms