RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 OR9I1Q8NGQ6 314 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 OR2T34Q8NGX1 318 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 OR2T3Q8NH03 318 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 USP33Q8TEY7 942 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 TOP1MTQ969P6 601 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 EFHD2Q96C19 240 aaPredicted RBP11.84□□□□□ -0.51
HDAC4-210ENST00000493582 CLIP3Q96DZ5 547 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 SCYL1Q96KG9 808 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 LGMNQ99538 433 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 OMDQ99983 421 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 UPF3AQ9H1J1 476 aaKnown RBP11.84□□□□□ -0.51
HDAC4-210ENST00000493582 IL1RL2Q9HB29 575 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 TMEM9Q9P0T7 183 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 SPO11Q9Y5K1 396 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 PTPRFP10586 1907 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 M0QYV0 167 aa11.83□□□□□ -0.51
HDAC4-210ENST00000493582 PHGDHO43175 533 aaKnown RBP11.83□□□□□ -0.51
HDAC4-210ENST00000493582 MICAL2O94851 1124 aa11.83□□□□□ -0.51
HDAC4-210ENST00000493582 POLBP06746 335 aa11.83□□□□□ -0.51
HDAC4-210ENST00000493582 HSPA1AP0DMV8 641 aaKnown RBP11.83□□□□□ -0.51
HDAC4-210ENST00000493582 HSPA1BP0DMV9 641 aaKnown RBP11.83□□□□□ -0.51
HDAC4-210ENST00000493582 NEK2P51955 445 aa11.83□□□□□ -0.51
HDAC4-210ENST00000493582 SPCS2Q15005 226 aa11.83□□□□□ -0.51
HDAC4-210ENST00000493582 PPP1R3AQ16821 1122 aa11.83□□□□□ -0.51
HDAC4-210ENST00000493582 CCDC14Q49A88 953 aa11.83□□□□□ -0.51
HDAC4-210ENST00000493582 CMTR2Q8IYT2 770 aaKnown RBP11.83□□□□□ -0.51
HDAC4-210ENST00000493582 MAGEE2Q8TD90 523 aaPredicted RBP11.83□□□□□ -0.51
HDAC4-210ENST00000493582 SYTL5Q8TDW5 730 aaPredicted RBP11.83□□□□□ -0.51
HDAC4-210ENST00000493582 CLEC4DQ8WXI8 215 aa11.83□□□□□ -0.51
HDAC4-210ENST00000493582 SGCDQ92629 289 aa11.83□□□□□ -0.51
HDAC4-210ENST00000493582 DUS3LQ96G46 650 aaKnown RBP11.83□□□□□ -0.51
HDAC4-210ENST00000493582 ZNF641Q96N77 438 aaPredicted RBP11.83□□□□□ -0.51
HDAC4-210ENST00000493582 IDI2Q9BXS1 227 aa11.83□□□□□ -0.51
HDAC4-210ENST00000493582 GLIS2Q9BZE0 524 aaPredicted RBP11.83□□□□□ -0.51
HDAC4-210ENST00000493582 LHPPQ9H008 270 aa11.83□□□□□ -0.51
HDAC4-210ENST00000493582 ADAMTS10Q9H324 1103 aa11.83□□□□□ -0.51
HDAC4-210ENST00000493582 RAD21L1Q9H4I0 556 aa11.83□□□□□ -0.51
HDAC4-210ENST00000493582 DBNDD1Q9H9R9 158 aa11.83□□□□□ -0.51
HDAC4-210ENST00000493582 MRPL40Q9NQ50 206 aaKnown RBP11.83□□□□□ -0.51
HDAC4-210ENST00000493582 KLHL3Q9UH77 587 aa11.83□□□□□ -0.51
HDAC4-210ENST00000493582 SLC39A10Q9ULF5 831 aa11.83□□□□□ -0.51
HDAC4-210ENST00000493582 KRT19P08727 400 aa11.83□□□□□ -0.52
HDAC4-210ENST00000493582 SOX11P35716 441 aa11.83□□□□□ -0.52
HDAC4-210ENST00000493582 AVPR1AP37288 418 aa11.83□□□□□ -0.52
HDAC4-210ENST00000493582 MAGEA12P43365 314 aa11.83□□□□□ -0.52
HDAC4-210ENST00000493582 LIMK2P53671 638 aa11.83□□□□□ -0.52
HDAC4-210ENST00000493582 FASTKQ14296 549 aaKnown RBP11.83□□□□□ -0.52
HDAC4-210ENST00000493582 PGM5Q15124 567 aa11.83□□□□□ -0.52
HDAC4-210ENST00000493582 SLC27A3Q5K4L6 730 aa11.83□□□□□ -0.52
HDAC4-210ENST00000493582 INTS11Q5TA45 600 aaKnown RBP11.83□□□□□ -0.52
HDAC4-210ENST00000493582 KRT27Q7Z3Y8 459 aa11.83□□□□□ -0.52
HDAC4-210ENST00000493582 MCF2L2Q86YR7 1114 aa11.83□□□□□ -0.52
HDAC4-210ENST00000493582 CCDC60Q8IWA6 550 aaPredicted RBP11.83□□□□□ -0.52
HDAC4-210ENST00000493582 DHRSXQ8N5I4 330 aa11.83□□□□□ -0.52
HDAC4-210ENST00000493582 SEPT8Q92599 483 aa11.83□□□□□ -0.52
HDAC4-210ENST00000493582 LRCH3Q96II8 777 aa11.83□□□□□ -0.52
HDAC4-210ENST00000493582 PSD2Q9BQI7 771 aa11.83□□□□□ -0.52
HDAC4-210ENST00000493582 CDCA7Q9BWT1 371 aaPredicted RBP11.83□□□□□ -0.52
HDAC4-210ENST00000493582 CCM2LQ9NUG4 571 aaPredicted RBP11.83□□□□□ -0.52
HDAC4-210ENST00000493582 ARMC1Q9NVT9 282 aa11.83□□□□□ -0.52
HDAC4-210ENST00000493582 ATP11BQ9Y2G3 1177 aa11.83□□□□□ -0.52
HDAC4-210ENST00000493582 SDHDO14521 159 aa11.83□□□□□ -0.52
HDAC4-210ENST00000493582 MED7O43513 233 aa11.83□□□□□ -0.52
HDAC4-210ENST00000493582 SYNCRIPO60506 623 aaKnown RBP11.83□□□□□ -0.52
HDAC4-210ENST00000493582 RAD17O75943 681 aa11.83□□□□□ -0.52
HDAC4-210ENST00000493582 SNAP29O95721 258 aa11.83□□□□□ -0.52
HDAC4-210ENST00000493582 MT-CO1P00395 513 aa11.83□□□□□ -0.52
HDAC4-210ENST00000493582 HNRNPLP14866 589 aaKnown RBP eCLIP11.83□□□□□ -0.522e-10■■□□□ 13.2
HDAC4-210ENST00000493582 OSTNP61366 133 aa11.83□□□□□ -0.52
HDAC4-210ENST00000493582 PRKCEQ02156 737 aa11.83□□□□□ -0.52
HDAC4-210ENST00000493582 Q3C1V9 767 aa11.83□□□□□ -0.52
HDAC4-210ENST00000493582 CYBRD1Q53TN4 286 aa11.83□□□□□ -0.52
HDAC4-210ENST00000493582 KDM1BQ8NB78 822 aa11.83□□□□□ -0.52
HDAC4-210ENST00000493582 CAPSLQ8WWF8 208 aa11.83□□□□□ -0.52
HDAC4-210ENST00000493582 ZNF669Q96BR6 464 aaPredicted RBP11.83□□□□□ -0.52
HDAC4-210ENST00000493582 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.83□□□□□ -0.521e-7■■■■■ 26.8
HDAC4-210ENST00000493582 MORF4L1Q9UBU8 362 aa11.83□□□□□ -0.52
HDAC4-210ENST00000493582 VTI1BQ9UEU0 232 aa11.83□□□□□ -0.52
HDAC4-210ENST00000493582 EIF3FO00303 357 aaPredicted RBP11.82□□□□□ -0.52
HDAC4-210ENST00000493582 MRASO14807 208 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 S100BP04271 92 aaPredicted RBP11.82□□□□□ -0.52
HDAC4-210ENST00000493582 OXTRP30559 389 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 ATXN1P54253 815 aaKnown RBP11.82□□□□□ -0.52
HDAC4-210ENST00000493582 ADAM17P78536 824 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 PPIL2Q13356 520 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 AQP6Q13520 282 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 DUOXA2Q1HG44 320 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 BOLA3Q53S33 107 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 ZYG11AQ6WRX3 759 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 CEP44Q9C0F1 390 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 XYLT2Q9H1B5 865 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 AGPAT4Q9NRZ5 378 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 PKD2L2Q9NZM6 624 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 TMEM181Q9P2C4 612 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 WARS2Q9UGM6 360 aaKnown RBP11.82□□□□□ -0.52
HDAC4-210ENST00000493582 DHRS12A0PJE2 317 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 ACOX3O15254 700 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 H2AFYO75367 372 aaKnown RBP11.82□□□□□ -0.52
HDAC4-210ENST00000493582 MT-ND1P03886 318 aa11.82□□□□□ -0.52
HDAC4-210ENST00000493582 GPD2P43304 727 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms