RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 RPE65Q16518 533 aa3.23□□□□□ -1.89
CPSF3-205ENST00000489629 MAP9Q49MG5 647 aa3.23□□□□□ -1.89
CPSF3-205ENST00000489629 NCAPH2Q6IBW4 605 aa3.23□□□□□ -1.89
CPSF3-205ENST00000489629 RETSATQ6NUM9 610 aa3.23□□□□□ -1.89
CPSF3-205ENST00000489629 SYNE3Q6ZMZ3 975 aa3.23□□□□□ -1.89
CPSF3-205ENST00000489629 SYT13Q7L8C5 426 aa3.23□□□□□ -1.89
CPSF3-205ENST00000489629 MCPH1Q8NEM0 835 aa3.23□□□□□ -1.89
CPSF3-205ENST00000489629 KTI12Q96EK9 354 aaPredicted RBP3.23□□□□□ -1.89
CPSF3-205ENST00000489629 TXNDC15Q96J42 360 aa3.23□□□□□ -1.89
CPSF3-205ENST00000489629 ADGRG7Q96K78 797 aa3.23□□□□□ -1.89
CPSF3-205ENST00000489629 WDR6Q9NNW5 1121 aaKnown RBP3.23□□□□□ -1.89
CPSF3-205ENST00000489629 G6PC2Q9NQR9 355 aa3.23□□□□□ -1.89
CPSF3-205ENST00000489629 DACT1Q9NYF0 836 aa3.23□□□□□ -1.89
CPSF3-205ENST00000489629 NLKQ9UBE8 527 aa3.23□□□□□ -1.89
CPSF3-205ENST00000489629 HDAC6Q9UBN7 1215 aa3.23□□□□□ -1.89
CPSF3-205ENST00000489629 LRCH1Q9Y2L9 728 aa3.23□□□□□ -1.89
CPSF3-205ENST00000489629 MORC2Q9Y6X9 1032 aaPredicted RBP3.23□□□□□ -1.89
CPSF3-205ENST00000489629 A0A096LPK6 155 aa3.22□□□□□ -1.89
CPSF3-205ENST00000489629 ABHD14A-ACY1A0A1B0GW23 586 aa3.22□□□□□ -1.89
CPSF3-205ENST00000489629 OR6C68A6NDL8 312 aa3.22□□□□□ -1.89
CPSF3-205ENST00000489629 KDM4EB2RXH2 506 aaPredicted RBP3.22□□□□□ -1.89
CPSF3-205ENST00000489629 NPIPB11E5RHQ5 1161 aa3.22□□□□□ -1.89
CPSF3-205ENST00000489629 E7EVH7 732 aa3.22□□□□□ -1.89
CPSF3-205ENST00000489629 TULP2O00295 520 aa3.22□□□□□ -1.89
CPSF3-205ENST00000489629 CHL1O00533 1208 aa3.22□□□□□ -1.89
CPSF3-205ENST00000489629 METTL18O95568 372 aa3.22□□□□□ -1.89
CPSF3-205ENST00000489629 YWHAQP27348 245 aa3.22□□□□□ -1.89
CPSF3-205ENST00000489629 HTR3AP46098 478 aa3.22□□□□□ -1.89
CPSF3-205ENST00000489629 GPR12P47775 334 aa3.22□□□□□ -1.89
CPSF3-205ENST00000489629 KRTAP10-5P60370 271 aa3.22□□□□□ -1.89
CPSF3-205ENST00000489629 ICA1Q05084 483 aa3.22□□□□□ -1.89
CPSF3-205ENST00000489629 FOXO1Q12778 655 aa3.22□□□□□ -1.89
CPSF3-205ENST00000489629 DLG1Q12959 904 aa3.22□□□□□ -1.89
CPSF3-205ENST00000489629 MYBPHQ13203 477 aa3.22□□□□□ -1.89
CPSF3-205ENST00000489629 SNTA1Q13424 505 aa3.22□□□□□ -1.89
CPSF3-205ENST00000489629 BYSLQ13895 437 aaKnown RBP3.22□□□□□ -1.89
CPSF3-205ENST00000489629 SETMARQ53H47 684 aaPredicted RBP3.22□□□□□ -1.89
CPSF3-205ENST00000489629 FOXP4Q8IVH2 680 aaPredicted RBP3.22□□□□□ -1.89
CPSF3-205ENST00000489629 CACNA2D3Q8IZS8 1091 aa3.22□□□□□ -1.89
CPSF3-205ENST00000489629 FSIP1Q8NA03 581 aa3.22□□□□□ -1.89
CPSF3-205ENST00000489629 SETD9Q8NE22 299 aa3.22□□□□□ -1.89
CPSF3-205ENST00000489629 ATOH1Q92858 354 aaPredicted RBP3.22□□□□□ -1.89
CPSF3-205ENST00000489629 NODALQ96S42 347 aa3.22□□□□□ -1.89
CPSF3-205ENST00000489629 CRB3Q9BUF7 120 aa3.22□□□□□ -1.89
CPSF3-205ENST00000489629 SPRY4Q9C004 299 aa3.22□□□□□ -1.89
CPSF3-205ENST00000489629 SDF2L1Q9HCN8 221 aa3.22□□□□□ -1.89
CPSF3-205ENST00000489629 ATP8A2Q9NTI2 1148 aa3.22□□□□□ -1.89
CPSF3-205ENST00000489629 DONSONQ9NYP3 566 aa3.22□□□□□ -1.89
CPSF3-205ENST00000489629 DHDHQ9UQ10 334 aa3.22□□□□□ -1.89
CPSF3-205ENST00000489629 CLDN16Q9Y5I7 305 aa3.22□□□□□ -1.89
CPSF3-205ENST00000489629 WDR81Q562E7 1941 aa3.21□□□□□ -1.9
CPSF3-205ENST00000489629 J3KR12 359 aa3.21□□□□□ -1.9
CPSF3-205ENST00000489629 TIMM23O14925 209 aa3.21□□□□□ -1.9
CPSF3-205ENST00000489629 STRNO43815 780 aa3.21□□□□□ -1.9
CPSF3-205ENST00000489629 CSTBP04080 98 aaKnown RBP3.21□□□□□ -1.9
CPSF3-205ENST00000489629 SP1P08047 785 aa3.21□□□□□ -1.9
CPSF3-205ENST00000489629 KRT10P13645 584 aa3.21□□□□□ -1.9
CPSF3-205ENST00000489629 FMO4P31512 558 aa3.21□□□□□ -1.9
CPSF3-205ENST00000489629 PTPN9P43378 593 aa3.21□□□□□ -1.9
CPSF3-205ENST00000489629 ARHGAP8P85298 464 aa3.21□□□□□ -1.9
CPSF3-205ENST00000489629 CYP4A11Q02928 519 aa3.21□□□□□ -1.9
CPSF3-205ENST00000489629 SLC18A2Q05940 514 aa3.21□□□□□ -1.9
CPSF3-205ENST00000489629 FAM27E3Q08E93 113 aa3.21□□□□□ -1.9
CPSF3-205ENST00000489629 ST3GAL1Q11201 340 aa3.21□□□□□ -1.9
CPSF3-205ENST00000489629 IL13RA2Q14627 380 aa3.21□□□□□ -1.9
CPSF3-205ENST00000489629 LPIN1Q14693 890 aa3.21□□□□□ -1.9
CPSF3-205ENST00000489629 FAM69BQ5VUD6 431 aa3.21□□□□□ -1.9
CPSF3-205ENST00000489629 SMIM29Q86T20 159 aa3.21□□□□□ -1.9
CPSF3-205ENST00000489629 GALNT15Q8N3T1 639 aa3.21□□□□□ -1.9
CPSF3-205ENST00000489629 PGBD5Q8N414 524 aa3.21□□□□□ -1.9
CPSF3-205ENST00000489629 OR6Y1Q8NGX8 325 aa3.21□□□□□ -1.9
CPSF3-205ENST00000489629 BICD1Q96G01 975 aa3.21□□□□□ -1.9
CPSF3-205ENST00000489629 PCGF6Q9BYE7 350 aa3.21□□□□□ -1.9
CPSF3-205ENST00000489629 ZNF700Q9H0M5 742 aa3.21□□□□□ -1.9
CPSF3-205ENST00000489629 TLR8Q9NR97 1041 aaKnown RBP3.21□□□□□ -1.9
CPSF3-205ENST00000489629 SAA2-SAA4A0A096LPE2 208 aa3.2□□□□□ -1.9
CPSF3-205ENST00000489629 MAGEA13PA6NCF6 341 aa3.2□□□□□ -1.9
CPSF3-205ENST00000489629 PRAC2D3DTV9 90 aa3.2□□□□□ -1.9
CPSF3-205ENST00000489629 SEPT4O43236 478 aa3.2□□□□□ -1.9
CPSF3-205ENST00000489629 SOCS5O75159 536 aa3.2□□□□□ -1.9
CPSF3-205ENST00000489629 CBX6O95503 412 aa3.2□□□□□ -1.9
CPSF3-205ENST00000489629 AFPP02771 609 aaKnown RBP3.2□□□□□ -1.9
CPSF3-205ENST00000489629 IFIT2P09913 472 aaKnown RBP3.2□□□□□ -1.9
CPSF3-205ENST00000489629 CTPS1P17812 591 aa3.2□□□□□ -1.9
CPSF3-205ENST00000489629 CST5P28325 142 aaPredicted RBP3.2□□□□□ -1.9
CPSF3-205ENST00000489629 PRKAA2P54646 552 aa3.2□□□□□ -1.9
CPSF3-205ENST00000489629 ME3Q16798 604 aa3.2□□□□□ -1.9
CPSF3-205ENST00000489629 AP5B1Q2VPB7 878 aa3.2□□□□□ -1.9
CPSF3-205ENST00000489629 DCAF6Q58WW2 860 aa3.2□□□□□ -1.9
CPSF3-205ENST00000489629 RUNDC3AQ59EK9 446 aa3.2□□□□□ -1.9
CPSF3-205ENST00000489629 XKR9Q5GH70 373 aa3.2□□□□□ -1.9
CPSF3-205ENST00000489629 OTUD3Q5T2D3 398 aaPredicted RBP3.2□□□□□ -1.9
CPSF3-205ENST00000489629 TYW3Q6IPR3 259 aaKnown RBP3.2□□□□□ -1.9
CPSF3-205ENST00000489629 GJB7Q6PEY0 223 aa3.2□□□□□ -1.9
CPSF3-205ENST00000489629 RHBDF2Q6PJF5 856 aa3.2□□□□□ -1.9
CPSF3-205ENST00000489629 CCDC129Q6ZRS4 1044 aa3.2□□□□□ -1.9
CPSF3-205ENST00000489629 NAGSQ8N159 534 aa3.2□□□□□ -1.9
CPSF3-205ENST00000489629 AADATQ8N5Z0 425 aa3.2□□□□□ -1.9
CPSF3-205ENST00000489629 RFWD2Q8NHY2 731 aa3.2□□□□□ -1.9
CPSF3-205ENST00000489629 SPATA20Q8TB22 786 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms