RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 SLCO4A1Q96BD0 722 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 HDAC11Q96DB2 347 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 SLC9A7Q96T83 725 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 EIF2AQ9BY44 585 aaKnown RBP12.36□□□□□ -0.43
COL3A1-206ENST00000487010 DUSP16Q9BY84 665 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 ANLNQ9NQW6 1124 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 SARDHQ9UL12 918 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 SBF1O95248 1867 aa12.36□□□□□ -0.43
COL3A1-206ENST00000487010 PAPPA2Q9BXP8 1791 aa12.35□□□□□ -0.43
COL3A1-206ENST00000487010 SHROOM3Q8TF72 1996 aa12.35□□□□□ -0.43
COL3A1-206ENST00000487010 hCG_2014768A0A024R1R8 64 aa12.35□□□□□ -0.43
COL3A1-206ENST00000487010 H3BNH8 94 aa12.35□□□□□ -0.43
COL3A1-206ENST00000487010 AP3B1O00203 1094 aa12.35□□□□□ -0.43
COL3A1-206ENST00000487010 CSPG5O95196 566 aa12.35□□□□□ -0.43
COL3A1-206ENST00000487010 POLD2P49005 469 aa12.35□□□□□ -0.43
COL3A1-206ENST00000487010 HCAR3P49019 387 aa12.35□□□□□ -0.43
COL3A1-206ENST00000487010 AIF1P55008 147 aa12.35□□□□□ -0.43
COL3A1-206ENST00000487010 RAB10P61026 200 aa12.35□□□□□ -0.43
COL3A1-206ENST00000487010 LAMC2Q13753 1193 aa12.35□□□□□ -0.43
COL3A1-206ENST00000487010 LRP8Q14114 963 aa12.35□□□□□ -0.43
COL3A1-206ENST00000487010 ZNF460Q14592 562 aa12.35□□□□□ -0.43
COL3A1-206ENST00000487010 KCTD2Q14681 263 aa12.35□□□□□ -0.43
COL3A1-206ENST00000487010 DGKDQ16760 1214 aa12.35□□□□□ -0.43
COL3A1-206ENST00000487010 INTS6LQ5JSJ4 861 aaKnown RBP12.35□□□□□ -0.43
COL3A1-206ENST00000487010 NAPEPLDQ6IQ20 393 aa12.35□□□□□ -0.43
COL3A1-206ENST00000487010 HFE2Q6ZVN8 426 aa12.35□□□□□ -0.43
COL3A1-206ENST00000487010 CEP97Q8IW35 865 aa12.35□□□□□ -0.43
COL3A1-206ENST00000487010 HMGCLL1Q8TB92 370 aa12.35□□□□□ -0.43
COL3A1-206ENST00000487010 LPGAT1Q92604 370 aa12.35□□□□□ -0.43
COL3A1-206ENST00000487010 NTAN1Q96AB6 310 aa12.35□□□□□ -0.43
COL3A1-206ENST00000487010 TMIGD2Q96BF3 282 aa12.35□□□□□ -0.43
COL3A1-206ENST00000487010 DUS3LQ96G46 650 aaKnown RBP12.35□□□□□ -0.43
COL3A1-206ENST00000487010 ZNF512Q96ME7 567 aaPredicted RBP12.35□□□□□ -0.43
COL3A1-206ENST00000487010 VAT1Q99536 393 aa12.35□□□□□ -0.43
COL3A1-206ENST00000487010 HNRNPABQ99729 332 aaKnown RBP12.35□□□□□ -0.43
COL3A1-206ENST00000487010 OMDQ99983 421 aa12.35□□□□□ -0.43
COL3A1-206ENST00000487010 TRPV6Q9H1D0 765 aa12.35□□□□□ -0.43
COL3A1-206ENST00000487010 CHCHD3Q9NX63 227 aaKnown RBP12.35□□□□□ -0.43
COL3A1-206ENST00000487010 GDAP2Q9NXN4 497 aa12.35□□□□□ -0.43
COL3A1-206ENST00000487010 UBP1Q9NZI7 540 aa12.35□□□□□ -0.43
COL3A1-206ENST00000487010 NCKIPSDQ9NZQ3 722 aa12.35□□□□□ -0.43
COL3A1-206ENST00000487010 IPO11Q9UI26 975 aaKnown RBP12.35□□□□□ -0.43
COL3A1-206ENST00000487010 MYRFQ9Y2G1 1151 aa12.35□□□□□ -0.43
COL3A1-206ENST00000487010 PPP2R3BQ9Y5P8 575 aa12.35□□□□□ -0.43
COL3A1-206ENST00000487010 TCRBV3S1A0A5B6 114 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 HEATR9A2RTY3 570 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 I6L893 689 aaPredicted RBP12.34□□□□□ -0.43
COL3A1-206ENST00000487010 FBP2O00757 339 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 BEST1O76090 585 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 YBX3P16989 372 aaKnown RBP eCLIP12.34□□□□□ -0.43
COL3A1-206ENST00000487010 DNAJB2P25686 324 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 SLC7A1P30825 629 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 DNAJB13P59910 316 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 GALNT2Q10471 571 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 SCAPQ12770 1279 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 PRPSAP1Q14558 356 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 MAPRE2Q15555 327 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 UGP2Q16851 508 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 Q3C1V9 767 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 REP15Q6BDI9 236 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 SLC27A1Q6PCB7 646 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 CNSTQ6PJW8 725 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 PIWIL4Q7Z3Z4 852 aaKnown RBP12.34□□□□□ -0.43
COL3A1-206ENST00000487010 PTAR1Q7Z6K3 402 aaPredicted RBP12.34□□□□□ -0.43
COL3A1-206ENST00000487010 HERC6Q8IVU3 1022 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 MFSD6LQ8IWD5 586 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 CNTN4Q8IWV2 1026 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 SPATA6LQ8N4H0 392 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 APPL2Q8NEU8 664 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 SPPL2BQ8TCT7 592 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 KCTD13Q8WZ19 329 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 GFM2Q969S9 779 aaKnown RBP12.34□□□□□ -0.43
COL3A1-206ENST00000487010 TNIP3Q96KP6 325 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 TEKT5Q96M29 485 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 UHRF1Q96T88 793 aaPredicted RBP12.34□□□□□ -0.43
COL3A1-206ENST00000487010 SLC29A1Q99808 456 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 TMEM79Q9BSE2 394 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 MRPL46Q9H2W6 279 aaKnown RBP12.34□□□□□ -0.43
COL3A1-206ENST00000487010 CAAP1Q9H8G2 361 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 WDR6Q9NNW5 1121 aaKnown RBP12.34□□□□□ -0.43
COL3A1-206ENST00000487010 TXNRD2Q9NNW7 524 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 PNPLA3Q9NST1 481 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 OLAHQ9NV23 265 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 CACNA2D2Q9NY47 1150 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 UBQLN1Q9UMX0 589 aaKnown RBP12.34□□□□□ -0.43
COL3A1-206ENST00000487010 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.34□□□□□ -0.43
COL3A1-206ENST00000487010 SQORQ9Y6N5 450 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 TANC1Q9C0D5 1861 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 FAM95CA0A1B0GW59 222 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 CLDN5O00501 218 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 FYNP06241 537 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 ZNF286BP0CG31 522 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 STMN1P16949 149 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 FGFR3P22607 806 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 TUBA4AP68366 448 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 MPP1Q00013 466 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 SQLEQ14534 574 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 MTX3Q5HYI7 312 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 PKN3Q6P5Z2 889 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 TRIM67Q6ZTA4 783 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms