RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 PRPF18Q99633 342 aaKnown RBP11.14□□□□□ -0.63
HDAC6-228ENST00000486227 GRIP2Q9C0E4 1043 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.14□□□□□ -0.63
HDAC6-228ENST00000486227 LGALS13Q9UHV8 139 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 RWDD3Q9Y3V2 267 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 UBR2Q8IWV8 1755 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 H0YGN5 161 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 ETS2P15036 469 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 CDCA2Q69YH5 1023 aaPredicted RBP11.14□□□□□ -0.63
HDAC6-228ENST00000486227 FBXO6Q9NRD1 293 aaPredicted RBP11.14□□□□□ -0.63
HDAC6-228ENST00000486227 GRHL1Q9NZI5 618 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 NFS1Q9Y697 457 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 V9GYQ6 96 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 C10orf71Q711Q0 1435 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 PTPRJQ12913 1337 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 TPST1O60507 370 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 SNAI1O95863 264 aaPredicted RBP11.14□□□□□ -0.63
HDAC6-228ENST00000486227 TCF4P15884 667 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 SLC5A3P53794 718 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 PPP1R15BQ5SWA1 713 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 TXNRD3NBQ6F5E7 133 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 SLC22A9Q8IVM8 553 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 KYQ8NBH2 561 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 CEP19Q96LK0 163 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 C2orf49Q9BVC5 232 aaPredicted RBP11.14□□□□□ -0.63
HDAC6-228ENST00000486227 TM6SF2Q9BZW4 377 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 ARL8BQ9NVJ2 186 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 PGM3O95394 542 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 APOA1P02647 267 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 FMO4P31512 558 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 CDK7P50613 346 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 BCL2L1Q07817 233 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 SMARCB1Q12824 385 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 TARBP2Q15633 366 aaKnown RBP11.14□□□□□ -0.63
HDAC6-228ENST00000486227 HIST2H2ACQ16777 129 aaPredicted RBP11.14□□□□□ -0.63
HDAC6-228ENST00000486227 AGKQ53H12 422 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 TCHHL1Q5QJ38 904 aaPredicted RBP11.14□□□□□ -0.63
HDAC6-228ENST00000486227 HIST2H2AA3Q6FI13 130 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 FBXO22Q8NEZ5 403 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 LMO3Q8TAP4 145 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 SPPL2BQ8TCT7 592 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 MCRS1Q96EZ8 462 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 FIZ1Q96SL8 496 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 ADNPQ9H2P0 1102 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 ARHGEF4Q9NR80 690 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 ZDHHC18Q9NUE0 388 aa11.14□□□□□ -0.63
HDAC6-228ENST00000486227 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.14□□□□□ -0.635e-6■■■□□ 16.8
HDAC6-228ENST00000486227 MYH6P13533 1939 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 FAM237BA0A1B0GVD1 139 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 SMAD3P84022 425 aaKnown RBP11.13□□□□□ -0.63
HDAC6-228ENST00000486227 BST1Q10588 318 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 FNBP1LQ5T0N5 605 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 CERCAMQ5T4B2 595 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 ARHGAP17Q68EM7 881 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 PHACTR4Q8IZ21 702 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 RMND5BQ96G75 393 aaPredicted RBP11.13□□□□□ -0.63
HDAC6-228ENST00000486227 FAXDC2Q96IV6 333 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 NFKBIZQ9BYH8 718 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 OSGEPL1Q9H4B0 414 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 GMIPQ9P107 970 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 STK39Q9UEW8 545 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 CCDC88AQ3V6T2 1871 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 YJEFN3A6XGL0 299 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 PIGNO95427 931 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 GUCA1CO95843 209 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 PROCP04070 461 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 ITGA2BP08514 1039 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 FGFR1P11362 822 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 NR1H2P55055 460 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 WNT3AP56704 352 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 EIF2B5Q13144 721 aaKnown RBP11.13□□□□□ -0.63
HDAC6-228ENST00000486227 CTBP1Q13363 440 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 GRB14Q14449 540 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 CA9Q16790 459 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 ARMC12Q5T9G4 340 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 SLC41A1Q8IVJ1 513 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 ULK2Q8IYT8 1036 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 FBXO39Q8N4B4 442 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 PCDH19Q8TAB3 1148 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 CNDP1Q96KN2 507 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 ACBD6Q9BR61 282 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 FAM124BQ9H5Z6 455 aaPredicted RBP11.13□□□□□ -0.63
HDAC6-228ENST00000486227 UBDO15205 165 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 DCXO43602 365 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 MZF1P28698 734 aaPredicted RBP11.13□□□□□ -0.63
HDAC6-228ENST00000486227 PBLDP30039 288 aaPredicted RBP11.13□□□□□ -0.63
HDAC6-228ENST00000486227 AIF1P55008 147 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 TLE2Q04725 743 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 FAM187BQ17R55 369 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 SLC5A9Q2M3M2 681 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 TEX44Q53QW1 395 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 RNASEH2BQ5TBB1 312 aaKnown RBP11.13□□□□□ -0.63
HDAC6-228ENST00000486227 VSTM1Q6UX27 236 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 LRRC49Q8IUZ0 686 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 CFAP52Q8N1V2 620 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 PAIP1Q9H074 479 aaKnown RBP11.13□□□□□ -0.63
HDAC6-228ENST00000486227 RCOR3Q9P2K3 495 aaPredicted RBP11.13□□□□□ -0.63
HDAC6-228ENST00000486227 SNX13Q9Y5W8 968 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 STYXL1Q9Y6J8 313 aa11.13□□□□□ -0.63
HDAC6-228ENST00000486227 KLHL33A6NCF5 533 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms