RNA–Protein interactions for RNA: ENST00000476395.1

VAPB-205, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-205ENST00000476395 PERM1Q5SV97 790 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 MARCH8Q5T0T0 291 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 ZNF618Q5T7W0 954 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 TMEM198Q66K66 360 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 DHRS4L2Q6PKH6 230 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 SETD3Q86TU7 594 aaPredicted RBP8.5□□□□□ -1.05
VAPB-205ENST00000476395 FIBCD1Q8N539 461 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 SNX31Q8N9S9 440 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 FAM47BQ8NA70 645 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 LRTOMTQ8WZ04 291 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 PPP1R16BQ96T49 567 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 KLC2Q9H0B6 622 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 PCDHAC1Q9H158 963 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 Q9H521 79 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 WDR55Q9H6Y2 383 aaPredicted RBP8.5□□□□□ -1.05
VAPB-205ENST00000476395 CYP3A43Q9HB55 503 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 MRGBPQ9NV56 204 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 RNF19AQ9NV58 838 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 DICER1Q9UPY3 1922 aaKnown RBP8.5□□□□□ -1.05
VAPB-205ENST00000476395 ARHGEF37A1IGU5 675 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 ENO3P13929 434 aaPredicted RBP8.5□□□□□ -1.05
VAPB-205ENST00000476395 GOT1P17174 413 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 SLC1A6P48664 564 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 GTF2A2P52657 109 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 BCAR1P56945 870 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 KCNJ8Q15842 424 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 MGAT5BQ3V5L5 792 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 MTX3Q5HYI7 312 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 ATG16L1Q676U5 607 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 OR6B2Q6IFH4 312 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 LYSMD3Q7Z3D4 306 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 SNX32Q86XE0 403 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.5□□□□□ -1.05
VAPB-205ENST00000476395 STARD8Q92502 1023 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 NDRG1Q92597 394 aaKnown RBP8.5□□□□□ -1.05
VAPB-205ENST00000476395 EME1Q96AY2 570 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 SPATA17Q96L03 361 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 EPS8L2Q9H6S3 715 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 AS3MTQ9HBK9 375 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 PLK2Q9NYY3 685 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 SHROOM3Q8TF72 1996 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 NYNRINQ9P2P1 1898 aaKnown RBP8.5□□□□□ -1.05
VAPB-205ENST00000476395 A0A087WZ62 844 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 KRBA1A5PL33 1030 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 H3BMQ9 156 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 INO80B-WBP1J3KQ70 363 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 NRP1O14786 923 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 MFSD11O43934 449 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 H6PDO95479 791 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 CYP2C9P11712 490 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 MZF1P28698 734 aaPredicted RBP8.5□□□□□ -1.05
VAPB-205ENST00000476395 IRF9Q00978 393 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 TFDP2Q14188 446 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 FBXO16Q8IX29 292 aaPredicted RBP8.5□□□□□ -1.05
VAPB-205ENST00000476395 TMEM102Q8N9M5 508 aaPredicted RBP8.5□□□□□ -1.05
VAPB-205ENST00000476395 DDI1Q8WTU0 396 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 GIMAP1Q8WWP7 306 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 APBB2Q92870 758 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 HPS1Q92902 700 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 ZNF419Q96HQ0 510 aaPredicted RBP8.5□□□□□ -1.05
VAPB-205ENST00000476395 COG8Q96MW5 612 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 FDXACB1Q9BRP7 624 aaPredicted RBP8.5□□□□□ -1.05
VAPB-205ENST00000476395 CEP41Q9BYV8 373 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 FRMD8Q9BZ67 464 aaPredicted RBP8.5□□□□□ -1.05
VAPB-205ENST00000476395 GCOM2Q9BZD3 368 aaPredicted RBP8.5□□□□□ -1.05
VAPB-205ENST00000476395 FAM117AQ9C073 453 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 SPATC1LQ9H0A9 340 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 RPF1Q9H9Y2 349 aaKnown RBP8.5□□□□□ -1.05
VAPB-205ENST00000476395 DNAJC28Q9NX36 388 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 SYBUQ9NX95 663 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 CROTQ9UKG9 612 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 GIT1Q9Y2X7 761 aa8.5□□□□□ -1.05
VAPB-205ENST00000476395 H3BNH8 94 aa8.49□□□□□ -1.05
VAPB-205ENST00000476395 PRPSAP2O60256 369 aa8.49□□□□□ -1.05
VAPB-205ENST00000476395 TSPAN1O60635 241 aa8.49□□□□□ -1.05
VAPB-205ENST00000476395 JUNP05412 331 aaKnown RBP8.49□□□□□ -1.05
VAPB-205ENST00000476395 PABPC1P11940 636 aaKnown RBP8.49□□□□□ -1.05
VAPB-205ENST00000476395 CCDC130P13994 396 aa8.49□□□□□ -1.05
VAPB-205ENST00000476395 GLDCP23378 1020 aa8.49□□□□□ -1.05
VAPB-205ENST00000476395 NEK2P51955 445 aa8.49□□□□□ -1.05
VAPB-205ENST00000476395 ARPC4P59998 168 aa8.49□□□□□ -1.05
VAPB-205ENST00000476395 PMS2P3Q13401 168 aa8.49□□□□□ -1.05
VAPB-205ENST00000476395 CAMK2BQ13554 666 aa8.49□□□□□ -1.05
VAPB-205ENST00000476395 VGLL4Q14135 290 aa8.49□□□□□ -1.05
VAPB-205ENST00000476395 NR1D2Q14995 579 aa8.49□□□□□ -1.05
VAPB-205ENST00000476395 ARHGEF6Q15052 776 aa8.49□□□□□ -1.05
VAPB-205ENST00000476395 BOLA3Q53S33 107 aa8.49□□□□□ -1.05
VAPB-205ENST00000476395 FAM160B1Q5W0V3 765 aa8.49□□□□□ -1.05
VAPB-205ENST00000476395 CES3Q6UWW8 571 aa8.49□□□□□ -1.05
VAPB-205ENST00000476395 LIMS2Q7Z4I7 341 aa8.49□□□□□ -1.05
VAPB-205ENST00000476395 CMC1Q7Z7K0 106 aa8.49□□□□□ -1.05
VAPB-205ENST00000476395 ACOT1Q86TX2 421 aa8.49□□□□□ -1.05
VAPB-205ENST00000476395 CROCCP3Q8IVE0 287 aa8.49□□□□□ -1.05
VAPB-205ENST00000476395 ZC3H7AQ8IWR0 971 aaKnown RBP8.49□□□□□ -1.05
VAPB-205ENST00000476395 TNS4Q8IZW8 715 aa8.49□□□□□ -1.05
VAPB-205ENST00000476395 DDHD1Q8NEL9 900 aa8.49□□□□□ -1.05
VAPB-205ENST00000476395 BIRC8Q96P09 236 aa8.49□□□□□ -1.05
VAPB-205ENST00000476395 C2orf49Q9BVC5 232 aaPredicted RBP8.49□□□□□ -1.05
VAPB-205ENST00000476395 DRC3Q9H069 523 aa8.49□□□□□ -1.05
VAPB-205ENST00000476395 SOX17Q9H6I2 414 aaPredicted RBP8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms