RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 PIWIL2Q8TC59 973 aaKnown RBP13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 MYEOVQ96EZ4 313 aa13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 DNAJC1Q96KC8 554 aaKnown RBP13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 SUSD3Q96L08 255 aa13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 ZYG11BQ9C0D3 744 aa13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 TPST1O60507 370 aa13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 SLC1A2P43004 574 aa13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 GEMP55040 296 aa13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 ATXN7L2Q5T6C5 722 aaPredicted RBP13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 EMC10Q5UCC4 262 aa13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 CLEC6AQ6EIG7 209 aa13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 CCDC117Q8IWD4 279 aaPredicted RBP13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 PPFIBP2Q8ND30 876 aa13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 YME1L1Q96TA2 773 aa13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 CINPQ9BW66 212 aaPredicted RBP13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 PLAC1Q9HBJ0 212 aa13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 FAM159BA6NKW6 160 aa13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 RHOCP08134 193 aa13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 ART3Q13508 389 aa13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 KHDC1Q4VXA5 237 aaKnown RBP13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 GPR158Q5T848 1215 aa13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 RNF43Q68DV7 783 aa13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 TXNDC8Q6A555 127 aa13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 PCDH20Q8N6Y1 951 aaKnown RBP13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 SLC2A13Q96QE2 648 aa13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 GATA5Q9BWX5 397 aaPredicted RBP13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 CERS4Q9HA82 394 aa13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 SLC12A4Q9UP95 1085 aa13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 HBS1LQ9Y450 684 aaKnown RBP13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 ZFP37Q9Y6Q3 630 aaPredicted RBP13.9□□□□□ -0.18
CCDC88A-211ENST00000471947 PSME4Q14997 1843 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 ARHGEF37A1IGU5 675 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 DNAJC8O75937 253 aaPredicted RBP13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 GUCA1CO95843 209 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 SELPP16109 830 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 PPIDQ08752 370 aaKnown RBP13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 PDAP1Q13442 181 aaKnown RBP13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 CDH18Q13634 790 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 TCEA2Q15560 299 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 PPM1LQ5SGD2 360 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 PHTF2Q8N3S3 785 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 ARL14EPQ8N8R7 260 aaPredicted RBP13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 WDR60Q8WVS4 1066 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 CPNE1Q99829 537 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 CADM1Q9BY67 442 aaKnown RBP13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 POMKQ9H5K3 350 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 THAP1Q9NVV9 213 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 TAS2R1Q9NYW7 299 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 HACD3Q9P035 362 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 COPG2Q9UBF2 871 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 DCDC2Q9UHG0 476 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 ENPP3O14638 875 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 PTPN4P29074 926 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 CD151P48509 253 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 SMAD3P84022 425 aaKnown RBP13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 ZNF177Q13360 481 aaPredicted RBP13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 PCBP1Q15365 356 aaKnown RBP eCLIP13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 TAZQ16635 292 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 ARL13AQ5H913 290 aaPredicted RBP13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 SPANXN3Q5MJ09 141 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 RBM23Q86U06 439 aaKnown RBP13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 ANKLE1Q8NAG6 615 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 FBXO22Q8NEZ5 403 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 KCTD13Q8WZ19 329 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 LRRC39Q96DD0 335 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 TTPALQ9BTX7 342 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 FRMD8Q9BZ67 464 aaPredicted RBP13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 IL22Q9GZX6 179 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 FBXO44Q9H4M3 255 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 WASF2Q9Y6W5 498 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 WDR81Q562E7 1941 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 LOXHD1Q8IVV2 1947 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 LRRC14BA6NHZ5 514 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 SUPT3HB4E1H0 165 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 TRIM13O60858 407 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 NBNO60934 754 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 SUPT3HO75486 399 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 RHOBTB1O94844 696 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 SERPINE1P05121 402 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 HOXD8P13378 290 aaPredicted RBP13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 ARSDP51689 593 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 CYP4F8P98187 520 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 MAP7D1Q3KQU3 841 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 TNFAIP8L3Q5GJ75 292 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 CES4AQ5XG92 561 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 FSTL5Q8N475 847 aaPredicted RBP13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 NAT16Q8N8M0 369 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 OR52B2Q96RD2 323 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 COG4Q9H9E3 785 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 CCDC167Q9P0B6 97 aa13.89□□□□□ -0.19
CCDC88A-211ENST00000471947 CDH23Q9H251 3354 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 URB1O60287 2271 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 CCDC160A6NGH7 325 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 E5RI56 91 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 UBTFL6P0CB48 400 aaPredicted RBP13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 ATP5C1P36542 298 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 SERPINH1P50454 418 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 RENBPP51606 427 aa13.88□□□□□ -0.19
CCDC88A-211ENST00000471947 PRKD1Q15139 912 aaPredicted RBP13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms