RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 RGMBQ6NW40 437 aa19.33■□□□□ 0.69
VIM-203ENST00000469543 LINC00523Q86TU6 105 aa19.33■□□□□ 0.69
VIM-203ENST00000469543 LSMEM2Q8N112 164 aa19.33■□□□□ 0.69
VIM-203ENST00000469543 SPDL1Q96EA4 605 aa19.33■□□□□ 0.69
VIM-203ENST00000469543 SUSD3Q96L08 255 aa19.33■□□□□ 0.69
VIM-203ENST00000469543 TSGA13Q96PP4 275 aa19.33■□□□□ 0.69
VIM-203ENST00000469543 HAPLN3Q96S86 360 aa19.33■□□□□ 0.69
VIM-203ENST00000469543 SPC25Q9HBM1 224 aa19.33■□□□□ 0.69
VIM-203ENST00000469543 DPPA5A6NC42 116 aa19.33■□□□□ 0.68
VIM-203ENST00000469543 AIM2O14862 343 aa19.33■□□□□ 0.68
VIM-203ENST00000469543 CIB2O75838 187 aa19.33■□□□□ 0.68
VIM-203ENST00000469543 HNRNPLP14866 589 aaKnown RBP eCLIP19.33■□□□□ 0.68
VIM-203ENST00000469543 ETFBP38117 255 aa19.33■□□□□ 0.68
VIM-203ENST00000469543 CSRP3P50461 194 aa19.33■□□□□ 0.68
VIM-203ENST00000469543 PLK1P53350 603 aa19.33■□□□□ 0.68
VIM-203ENST00000469543 PTPRCAPQ14761 206 aa19.33■□□□□ 0.68
VIM-203ENST00000469543 PDCD2Q16342 344 aaPredicted RBP19.33■□□□□ 0.68
VIM-203ENST00000469543 PSMD5Q16401 504 aa19.33■□□□□ 0.68
VIM-203ENST00000469543 LSM12Q3MHD2 195 aaKnown RBP19.33■□□□□ 0.68
VIM-203ENST00000469543 TSTD2Q5T7W7 516 aa19.33■□□□□ 0.68
VIM-203ENST00000469543 RANBP10Q6VN20 620 aa19.33■□□□□ 0.68
VIM-203ENST00000469543 RNF148Q8N7C7 305 aa19.33■□□□□ 0.68
VIM-203ENST00000469543 SLC26A7Q8TE54 656 aa19.33■□□□□ 0.68
VIM-203ENST00000469543 GPR78Q96P69 363 aa19.33■□□□□ 0.68
VIM-203ENST00000469543 ILKAPQ9H0C8 392 aaPredicted RBP19.33■□□□□ 0.68
VIM-203ENST00000469543 SMOC2Q9H3U7 446 aa19.33■□□□□ 0.68
VIM-203ENST00000469543 NT5MQ9NPB1 228 aa19.33■□□□□ 0.68
VIM-203ENST00000469543 TCF7L2Q9NQB0 619 aa19.33■□□□□ 0.68
VIM-203ENST00000469543 ACOT9Q9Y305 439 aa19.33■□□□□ 0.68
VIM-203ENST00000469543 CDY1Q9Y6F8 540 aa19.33■□□□□ 0.68
VIM-203ENST00000469543 KCNU1A8MYU2 1149 aa19.32■□□□□ 0.68
VIM-203ENST00000469543 SEPT4O43236 478 aa19.32■□□□□ 0.68
VIM-203ENST00000469543 SMNDC1O75940 238 aaKnown RBP eCLIP19.32■□□□□ 0.68
VIM-203ENST00000469543 NEBLO76041 1014 aa19.32■□□□□ 0.68
VIM-203ENST00000469543 CSE1LP55060 971 aaKnown RBP19.32■□□□□ 0.68
VIM-203ENST00000469543 MLLT6P55198 1093 aaPredicted RBP19.32■□□□□ 0.68
VIM-203ENST00000469543 EFEMP1Q12805 493 aa19.32■□□□□ 0.68
VIM-203ENST00000469543 DBN1Q16643 649 aa19.32■□□□□ 0.68
VIM-203ENST00000469543 TMC7Q7Z402 723 aa19.32■□□□□ 0.68
VIM-203ENST00000469543 MYLK4Q86YV6 388 aaPredicted RBP19.32■□□□□ 0.68
VIM-203ENST00000469543 KLHDC9Q8NEP7 349 aa19.32■□□□□ 0.68
VIM-203ENST00000469543 MYEOVQ96EZ4 313 aa19.32■□□□□ 0.68
VIM-203ENST00000469543 HMCESQ96FZ2 354 aa19.32■□□□□ 0.68
VIM-203ENST00000469543 ELMO2Q96JJ3 720 aa19.32■□□□□ 0.68
VIM-203ENST00000469543 DDX50Q9BQ39 737 aaKnown RBP19.32■□□□□ 0.68
VIM-203ENST00000469543 CYP4F12Q9HCS2 524 aa19.32■□□□□ 0.68
VIM-203ENST00000469543 SSX2IPQ9Y2D8 614 aa19.32■□□□□ 0.68
VIM-203ENST00000469543 KCTD3Q9Y597 815 aa19.32■□□□□ 0.68
VIM-203ENST00000469543 OR51F1A6NGY5 319 aa19.32■□□□□ 0.68
VIM-203ENST00000469543 MATN2O00339 956 aa19.32■□□□□ 0.68
VIM-203ENST00000469543 MAP3K13O43283 966 aa19.32■□□□□ 0.68
VIM-203ENST00000469543 GRID2O43424 1007 aa19.32■□□□□ 0.68
VIM-203ENST00000469543 COX4I1P13073 169 aa19.32■□□□□ 0.68
VIM-203ENST00000469543 KCNA5P22460 613 aa19.32■□□□□ 0.68
VIM-203ENST00000469543 ATXN3P54252 364 aaPredicted RBP19.32■□□□□ 0.68
VIM-203ENST00000469543 WNT3AP56704 352 aa19.32■□□□□ 0.68
VIM-203ENST00000469543 KLF10Q13118 480 aa19.32■□□□□ 0.68
VIM-203ENST00000469543 MBTPS1Q14703 1052 aa19.32■□□□□ 0.68
VIM-203ENST00000469543 CLLU1OSQ5K130 101 aa19.32■□□□□ 0.68
VIM-203ENST00000469543 PSMG2Q969U7 264 aa19.32■□□□□ 0.68
VIM-203ENST00000469543 FAM136AQ96C01 138 aa19.32■□□□□ 0.68
VIM-203ENST00000469543 CDH22Q9UJ99 828 aa19.32■□□□□ 0.68
VIM-203ENST00000469543 TLL2Q9Y6L7 1015 aa19.32■□□□□ 0.68
VIM-203ENST00000469543 TARM1B6A8C7 271 aa19.31■□□□□ 0.68
VIM-203ENST00000469543 PBX3P40426 434 aa19.31■□□□□ 0.68
VIM-203ENST00000469543 CD86P42081 329 aa19.31■□□□□ 0.68
VIM-203ENST00000469543 COG7P83436 770 aa19.31■□□□□ 0.68
VIM-203ENST00000469543 DSC2Q02487 901 aa19.31■□□□□ 0.68
VIM-203ENST00000469543 TBCCQ15814 346 aa19.31■□□□□ 0.68
VIM-203ENST00000469543 TSNAXIP1Q2TAA8 658 aa19.31■□□□□ 0.68
VIM-203ENST00000469543 MFSD14CQ5VZR4 134 aa19.31■□□□□ 0.68
VIM-203ENST00000469543 NXNQ6DKJ4 435 aa19.31■□□□□ 0.68
VIM-203ENST00000469543 PTAR1Q7Z6K3 402 aaPredicted RBP19.31■□□□□ 0.68
VIM-203ENST00000469543 HEXDCQ8WVB3 486 aa19.31■□□□□ 0.68
VIM-203ENST00000469543 SIKE1Q9BRV8 207 aa19.31■□□□□ 0.68
VIM-203ENST00000469543 CATSPERBQ9H7T0 1116 aa19.31■□□□□ 0.68
VIM-203ENST00000469543 SORCS3Q9UPU3 1222 aa19.31■□□□□ 0.68
VIM-203ENST00000469543 TCAF1Q9Y4C2 921 aa19.31■□□□□ 0.68
VIM-203ENST00000469543 ACTL7AQ9Y615 435 aa19.31■□□□□ 0.68
VIM-203ENST00000469543 KPNA6O60684 536 aa19.31■□□□□ 0.68
VIM-203ENST00000469543 ANXA9O76027 345 aa19.31■□□□□ 0.68
VIM-203ENST00000469543 PEX11BO96011 259 aa19.31■□□□□ 0.68
VIM-203ENST00000469543 RAB10P61026 200 aa19.31■□□□□ 0.68
VIM-203ENST00000469543 SLC12A1Q13621 1099 aa19.31■□□□□ 0.68
VIM-203ENST00000469543 CSHL1Q14406 222 aa19.31■□□□□ 0.68
VIM-203ENST00000469543 TRMT5Q32P41 509 aaKnown RBP19.31■□□□□ 0.68
VIM-203ENST00000469543 LRRC8EQ6NSJ5 796 aa19.31■□□□□ 0.68
VIM-203ENST00000469543 ZYG11AQ6WRX3 759 aa19.31■□□□□ 0.68
VIM-203ENST00000469543 ZNF598Q86UK7 904 aaKnown RBP19.31■□□□□ 0.68
VIM-203ENST00000469543 RTL3Q8N8U3 475 aaKnown RBP19.31■□□□□ 0.68
VIM-203ENST00000469543 SNX31Q8N9S9 440 aa19.31■□□□□ 0.68
VIM-203ENST00000469543 CATSPER2Q96P56 530 aa19.31■□□□□ 0.68
VIM-203ENST00000469543 OLFM1Q99784 485 aa19.31■□□□□ 0.68
VIM-203ENST00000469543 TNFRSF12AQ9NP84 129 aa19.31■□□□□ 0.68
VIM-203ENST00000469543 GMIPQ9P107 970 aa19.31■□□□□ 0.68
VIM-203ENST00000469543 NLRC5Q86WI3 1866 aa19.3■□□□□ 0.68
VIM-203ENST00000469543 F8W8V4 182 aa19.3■□□□□ 0.68
VIM-203ENST00000469543 ACADSP16219 412 aa19.3■□□□□ 0.68
VIM-203ENST00000469543 STMN1P16949 149 aa19.3■□□□□ 0.68
VIM-203ENST00000469543 RPL14P50914 215 aaKnown RBP19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms