RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 RAMP2O60895 175 aa16.86■□□□□ 0.29
CCDC28B-204ENST00000469003 GSRP00390 522 aa16.86■□□□□ 0.29
CCDC28B-204ENST00000469003 JUPP14923 745 aa16.86■□□□□ 0.29
CCDC28B-204ENST00000469003 CLDN2P57739 230 aa16.86■□□□□ 0.29
CCDC28B-204ENST00000469003 C1QBPQ07021 282 aaKnown RBP16.86■□□□□ 0.29
CCDC28B-204ENST00000469003 PROX2Q3B8N5 592 aa16.86■□□□□ 0.29
CCDC28B-204ENST00000469003 PARS2Q7L3T8 475 aaKnown RBP16.86■□□□□ 0.29
CCDC28B-204ENST00000469003 APTXQ7Z2E3 356 aaKnown RBP16.86■□□□□ 0.29
CCDC28B-204ENST00000469003 SLFN11Q7Z7L1 901 aa16.86■□□□□ 0.29
CCDC28B-204ENST00000469003 ZSCAN30Q86W11 494 aa16.86■□□□□ 0.29
CCDC28B-204ENST00000469003 DCP2Q8IU60 420 aaKnown RBP16.86■□□□□ 0.29
CCDC28B-204ENST00000469003 SLC25A45Q8N413 288 aa16.86■□□□□ 0.29
CCDC28B-204ENST00000469003 IFT43Q96FT9 208 aa16.86■□□□□ 0.29
CCDC28B-204ENST00000469003 LRIG1Q96JA1 1093 aa16.86■□□□□ 0.29
CCDC28B-204ENST00000469003 AGPAT1Q99943 283 aa16.86■□□□□ 0.29
CCDC28B-204ENST00000469003 CALN1Q9BXU9 219 aa16.86■□□□□ 0.29
CCDC28B-204ENST00000469003 SLC17A9Q9BYT1 436 aa16.86■□□□□ 0.29
CCDC28B-204ENST00000469003 SEPT11Q9NVA2 429 aaKnown RBP16.86■□□□□ 0.29
CCDC28B-204ENST00000469003 RAXQ9Y2V3 346 aa16.86■□□□□ 0.29
CCDC28B-204ENST00000469003 APC2O95996 2303 aa16.86■□□□□ 0.29
CCDC28B-204ENST00000469003 A6NNZ2 444 aa16.85■□□□□ 0.29
CCDC28B-204ENST00000469003 TRIM38O00635 465 aa16.85■□□□□ 0.29
CCDC28B-204ENST00000469003 KDELR3O43731 214 aa16.85■□□□□ 0.29
CCDC28B-204ENST00000469003 DGKAP23743 735 aa16.85■□□□□ 0.29
CCDC28B-204ENST00000469003 ACP1P24666 158 aa16.85■□□□□ 0.29
CCDC28B-204ENST00000469003 SNRPD1P62314 119 aaKnown RBP16.85■□□□□ 0.29
CCDC28B-204ENST00000469003 MAPK8IP2Q13387 824 aaPredicted RBP16.85■□□□□ 0.29
CCDC28B-204ENST00000469003 ZNF211Q13398 564 aaPredicted RBP16.85■□□□□ 0.29
CCDC28B-204ENST00000469003 FGL2Q14314 439 aa16.85■□□□□ 0.29
CCDC28B-204ENST00000469003 NCAPHQ15003 741 aa16.85■□□□□ 0.29
CCDC28B-204ENST00000469003 POLD3Q15054 466 aaPredicted RBP16.85■□□□□ 0.29
CCDC28B-204ENST00000469003 HES3Q5TGS1 186 aa16.85■□□□□ 0.29
CCDC28B-204ENST00000469003 DNAJC24Q6P3W2 148 aa16.85■□□□□ 0.29
CCDC28B-204ENST00000469003 KYAT3Q6YP21 454 aaKnown RBP16.85■□□□□ 0.29
CCDC28B-204ENST00000469003 RYBPQ8N488 228 aaPredicted RBP16.85■□□□□ 0.29
CCDC28B-204ENST00000469003 OR2AP1Q8NGE2 309 aa16.85■□□□□ 0.29
CCDC28B-204ENST00000469003 RAB7BQ96AH8 199 aa16.85■□□□□ 0.29
CCDC28B-204ENST00000469003 BMFQ96LC9 184 aa16.85■□□□□ 0.29
CCDC28B-204ENST00000469003 HSD3B7Q9H2F3 369 aa16.85■□□□□ 0.29
CCDC28B-204ENST00000469003 SMG1Q96Q15 3661 aaKnown RBP16.84■□□□□ 0.29
CCDC28B-204ENST00000469003 ANKRD62A6NC57 917 aa16.84■□□□□ 0.29
CCDC28B-204ENST00000469003 ZSCAN5CA6NGD5 496 aaPredicted RBP16.84■□□□□ 0.29
CCDC28B-204ENST00000469003 C16orf96A6NNT2 1141 aa16.84■□□□□ 0.29
CCDC28B-204ENST00000469003 CCP110O43303 1012 aa16.84■□□□□ 0.29
CCDC28B-204ENST00000469003 TSPAN6O43657 245 aa16.84■□□□□ 0.29
CCDC28B-204ENST00000469003 SIGLEC6O43699 453 aa16.84■□□□□ 0.29
CCDC28B-204ENST00000469003 POP4O95707 220 aaKnown RBP16.84■□□□□ 0.29
CCDC28B-204ENST00000469003 PAK4O96013 591 aaPredicted RBP16.84■□□□□ 0.29
CCDC28B-204ENST00000469003 GKP32189 559 aa16.84■□□□□ 0.29
CCDC28B-204ENST00000469003 ZNF143P52747 638 aaPredicted RBP16.84■□□□□ 0.29
CCDC28B-204ENST00000469003 CLDN6P56747 220 aa16.84■□□□□ 0.29
CCDC28B-204ENST00000469003 COL28A1Q2UY09 1125 aa16.84■□□□□ 0.29
CCDC28B-204ENST00000469003 HS1BP3Q53T59 392 aa16.84■□□□□ 0.29
CCDC28B-204ENST00000469003 ZNF805Q5CZA5 627 aa16.84■□□□□ 0.29
CCDC28B-204ENST00000469003 EFHC2Q5JST6 749 aa16.84■□□□□ 0.29
CCDC28B-204ENST00000469003 Q6ZSR6 202 aa16.84■□□□□ 0.29
CCDC28B-204ENST00000469003 PTAR1Q7Z6K3 402 aaPredicted RBP16.84■□□□□ 0.29
CCDC28B-204ENST00000469003 SLC22A18ASQ8N1D0 253 aa16.84■□□□□ 0.29
CCDC28B-204ENST00000469003 PYROXD2Q8N2H3 581 aa16.84■□□□□ 0.29
CCDC28B-204ENST00000469003 RTL3Q8N8U3 475 aaKnown RBP16.84■□□□□ 0.29
CCDC28B-204ENST00000469003 OR6K2Q8NGY2 324 aa16.84■□□□□ 0.29
CCDC28B-204ENST00000469003 OR4C6Q8NH72 309 aa16.84■□□□□ 0.29
CCDC28B-204ENST00000469003 OSBPL1AQ9BXW6 950 aa16.84■□□□□ 0.29
CCDC28B-204ENST00000469003 SCUBE2Q9NQ36 999 aa16.84■□□□□ 0.29
CCDC28B-204ENST00000469003 GPR27Q9NS67 375 aa16.84■□□□□ 0.29
CCDC28B-204ENST00000469003 UCKL1Q9NWZ5 548 aa16.84■□□□□ 0.29
CCDC28B-204ENST00000469003 MYLKQ15746 1914 aa16.84■□□□□ 0.29
CCDC28B-204ENST00000469003 TDRD6O60522 2096 aaKnown RBP16.84■□□□□ 0.29
CCDC28B-204ENST00000469003 POM121BA6NF01 834 aa16.83■□□□□ 0.28
CCDC28B-204ENST00000469003 EIF4E1BA6NMX2 242 aaKnown RBP16.83■□□□□ 0.28
CCDC28B-204ENST00000469003 KRIT1O00522 736 aa16.83■□□□□ 0.28
CCDC28B-204ENST00000469003 RAD51BO15315 384 aa16.83■□□□□ 0.28
CCDC28B-204ENST00000469003 PIAS2O75928 621 aa16.83■□□□□ 0.28
CCDC28B-204ENST00000469003 MBD3O95983 291 aa16.83■□□□□ 0.28
CCDC28B-204ENST00000469003 CCDC172P0C7W6 258 aa16.83■□□□□ 0.28
CCDC28B-204ENST00000469003 FERP16591 822 aa16.83■□□□□ 0.28
CCDC28B-204ENST00000469003 EPHB2P29323 1055 aa16.83■□□□□ 0.28
CCDC28B-204ENST00000469003 ABL2P42684 1182 aa16.83■□□□□ 0.28
CCDC28B-204ENST00000469003 KNTC1P50748 2209 aa16.83■□□□□ 0.28
CCDC28B-204ENST00000469003 AIF1P55008 147 aa16.83■□□□□ 0.28
CCDC28B-204ENST00000469003 TARDBPQ13148 414 aaKnown RBP eCLIP16.83■□□□□ 0.28
CCDC28B-204ENST00000469003 MYLK3Q32MK0 819 aa16.83■□□□□ 0.28
CCDC28B-204ENST00000469003 PPP1R15BQ5SWA1 713 aa16.83■□□□□ 0.28
CCDC28B-204ENST00000469003 CCDC183Q5T5S1 534 aa16.83■□□□□ 0.28
CCDC28B-204ENST00000469003 SCYL2Q6P3W7 929 aa16.83■□□□□ 0.28
CCDC28B-204ENST00000469003 LEKR1Q6ZMV7 388 aa16.83■□□□□ 0.28
CCDC28B-204ENST00000469003 CACTIN-AS1Q8N1I8 211 aa16.83■□□□□ 0.28
CCDC28B-204ENST00000469003 CASKIN2Q8WXE0 1202 aa16.83■□□□□ 0.28
CCDC28B-204ENST00000469003 ASB12Q8WXK4 309 aa16.83■□□□□ 0.28
CCDC28B-204ENST00000469003 RFFLQ8WZ73 363 aa16.83■□□□□ 0.28
CCDC28B-204ENST00000469003 VOPP1Q96AW1 172 aa16.83■□□□□ 0.28
CCDC28B-204ENST00000469003 NXPE2Q96DL1 559 aa16.83■□□□□ 0.28
CCDC28B-204ENST00000469003 MCEEQ96PE7 176 aa16.83■□□□□ 0.28
CCDC28B-204ENST00000469003 LENG8Q96PV6 779 aaPredicted RBP16.83■□□□□ 0.28
CCDC28B-204ENST00000469003 C1QTNF2Q9BXJ5 285 aa16.83■□□□□ 0.28
CCDC28B-204ENST00000469003 NOL6Q9H6R4 1146 aaKnown RBP16.83■□□□□ 0.28
CCDC28B-204ENST00000469003 FZD10Q9ULW2 581 aa16.83■□□□□ 0.28
CCDC28B-204ENST00000469003 IGLON5A6NGN9 336 aa16.82■□□□□ 0.28
CCDC28B-204ENST00000469003 WASH4PA8MWX3 477 aa16.82■□□□□ 0.28
CCDC28B-204ENST00000469003 NEMP1O14524 444 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms