RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 KCNE4Q8WWG9 221 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 TTC17Q96AE7 1141 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 LMLNQ96KR4 655 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 NCAPGQ9BPX3 1015 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 ACE2Q9BYF1 805 aaPredicted RBP12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 SIK2Q9H0K1 926 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 LUC7LQ9NQ29 371 aaKnown RBP12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 CTTNBP2NLQ9P2B4 639 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 IP6K2Q9UHH9 426 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 VANGL2Q9ULK5 521 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 SSUH2Q9Y2M2 353 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 A0A1B0GVM2 712 aa12.18□□□□□ -0.46
SQSTM1-206ENST00000466342 TCAF2A6NFQ2 919 aa12.18□□□□□ -0.46
SQSTM1-206ENST00000466342 MYO1FO00160 1098 aa12.18□□□□□ -0.46
SQSTM1-206ENST00000466342 LUC7L3O95232 432 aaKnown RBP12.18□□□□□ -0.46
SQSTM1-206ENST00000466342 PCK1P35558 622 aa12.18□□□□□ -0.46
SQSTM1-206ENST00000466342 ERVPABLB-1P60509 514 aa12.18□□□□□ -0.46
SQSTM1-206ENST00000466342 ST8SIA6P61647 398 aa12.18□□□□□ -0.46
SQSTM1-206ENST00000466342 RACK1P63244 317 aaKnown RBP12.18□□□□□ -0.46
SQSTM1-206ENST00000466342 INSM1Q01101 510 aaPredicted RBP12.18□□□□□ -0.46
SQSTM1-206ENST00000466342 NRG1Q02297 640 aaPredicted RBP12.18□□□□□ -0.46
SQSTM1-206ENST00000466342 ZBTB16Q05516 673 aa12.18□□□□□ -0.46
SQSTM1-206ENST00000466342 NFATC3Q12968 1075 aa12.18□□□□□ -0.46
SQSTM1-206ENST00000466342 SLC12A1Q13621 1099 aa12.18□□□□□ -0.46
SQSTM1-206ENST00000466342 TCEAL1Q15170 157 aa12.18□□□□□ -0.46
SQSTM1-206ENST00000466342 SHBQ15464 509 aa12.18□□□□□ -0.46
SQSTM1-206ENST00000466342 C5orf22Q49AR2 442 aa12.18□□□□□ -0.46
SQSTM1-206ENST00000466342 KDM7AQ6ZMT4 941 aa12.18□□□□□ -0.46
SQSTM1-206ENST00000466342 SLFN11Q7Z7L1 901 aa12.18□□□□□ -0.46
SQSTM1-206ENST00000466342 C14orf80Q86SX3 495 aa12.18□□□□□ -0.46
SQSTM1-206ENST00000466342 CACUL1Q86Y37 369 aa12.18□□□□□ -0.46
SQSTM1-206ENST00000466342 ZNF683Q8IZ20 524 aa12.18□□□□□ -0.46
SQSTM1-206ENST00000466342 CARNMT1Q8N4J0 409 aa12.18□□□□□ -0.46
SQSTM1-206ENST00000466342 SLC35G2Q8TBE7 412 aa12.18□□□□□ -0.46
SQSTM1-206ENST00000466342 CYB5D2Q8WUJ1 264 aa12.18□□□□□ -0.46
SQSTM1-206ENST00000466342 BTBD6Q96KE9 485 aa12.18□□□□□ -0.46
SQSTM1-206ENST00000466342 RPRD1AQ96P16 312 aaPredicted RBP12.18□□□□□ -0.46
SQSTM1-206ENST00000466342 OSBPL2Q9H1P3 480 aa12.18□□□□□ -0.46
SQSTM1-206ENST00000466342 LCMT1Q9UIC8 334 aa12.18□□□□□ -0.46
SQSTM1-206ENST00000466342 PCDHA13Q9Y5I0 950 aa12.18□□□□□ -0.46
SQSTM1-206ENST00000466342 SNX10Q9Y5X0 201 aa12.18□□□□□ -0.46
SQSTM1-206ENST00000466342 FLNCQ14315 2725 aa12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 IGLV3-10A0A075B6K4 115 aa12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 K7ENP7 123 aa12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 YKT6O15498 198 aa12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 LRCH4O75427 683 aa12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 DXOO77932 396 aaKnown RBP12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 MTA2O94776 668 aa12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 FSBPO95073 299 aa12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 MOCS3O95396 460 aa12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 SEMA4FO95754 770 aa12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 CKMT2P17540 419 aa12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 MIPP30301 263 aa12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 E2F1Q01094 437 aa12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 CDH18Q13634 790 aa12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 GSE1Q14687 1217 aa12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 EFHC2Q5JST6 749 aa12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 ARTNQ5T4W7 220 aa12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 KIAA1614Q5VZ46 1190 aa12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 INO80CQ6PI98 192 aaPredicted RBP12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 LRRC31Q6UY01 552 aa12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 ATG14Q6ZNE5 492 aa12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 CCDC112Q8NEF3 446 aa12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 SKA1Q96BD8 255 aa12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 PEBP4Q96S96 227 aa12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 ORAI3Q9BRQ5 295 aa12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 BTBD1Q9H0C5 482 aa12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 PRSS16Q9NQE7 514 aa12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 OR12D3Q9UGF7 316 aa12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 INTS6Q9UL03 887 aaKnown RBP12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 FZD10Q9ULW2 581 aa12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 AP4E1Q9UPM8 1137 aa12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 REXO2Q9Y3B8 237 aaKnown RBP12.17□□□□□ -0.46
SQSTM1-206ENST00000466342 DRGXA6NNA5 263 aa12.16□□□□□ -0.46
SQSTM1-206ENST00000466342 PRPSAP2O60256 369 aa12.16□□□□□ -0.46
SQSTM1-206ENST00000466342 MT-CO3P00414 261 aa12.16□□□□□ -0.46
SQSTM1-206ENST00000466342 SRPRAP08240 638 aaKnown RBP12.16□□□□□ -0.46
SQSTM1-206ENST00000466342 ACP1P24666 158 aa12.16□□□□□ -0.46
SQSTM1-206ENST00000466342 L1CAMP32004 1257 aa12.16□□□□□ -0.46
SQSTM1-206ENST00000466342 MAN1A1P33908 653 aa12.16□□□□□ -0.46
SQSTM1-206ENST00000466342 CSKP41240 450 aa12.16□□□□□ -0.46
SQSTM1-206ENST00000466342 IRAK1P51617 712 aa12.16□□□□□ -0.46
SQSTM1-206ENST00000466342 CDH4P55283 916 aa12.16□□□□□ -0.46
SQSTM1-206ENST00000466342 OXCT1P55809 520 aa12.16□□□□□ -0.46
SQSTM1-206ENST00000466342 HNRNPA1L2Q32P51 320 aaKnown RBP12.16□□□□□ -0.46
SQSTM1-206ENST00000466342 FSCBQ5H9T9 825 aa12.16□□□□□ -0.46
SQSTM1-206ENST00000466342 PITRM1Q5JRX3 1037 aa12.16□□□□□ -0.46
SQSTM1-206ENST00000466342 ERMARDQ5T6L9 678 aa12.16□□□□□ -0.46
SQSTM1-206ENST00000466342 MANEALQ5VSG8 457 aa12.16□□□□□ -0.46
SQSTM1-206ENST00000466342 CYP4V2Q6ZWL3 525 aaPredicted RBP12.16□□□□□ -0.46
SQSTM1-206ENST00000466342 CIR1Q86X95 450 aaPredicted RBP12.16□□□□□ -0.46
SQSTM1-206ENST00000466342 PSTKQ8IV42 348 aaKnown RBP12.16□□□□□ -0.46
SQSTM1-206ENST00000466342 LRRC8AQ8IWT6 810 aa12.16□□□□□ -0.46
SQSTM1-206ENST00000466342 CCAR2Q8N163 923 aaKnown RBP12.16□□□□□ -0.46
SQSTM1-206ENST00000466342 ACRBPQ8NEB7 543 aa12.16□□□□□ -0.46
SQSTM1-206ENST00000466342 ANP32BQ92688 251 aaKnown RBP12.16□□□□□ -0.46
SQSTM1-206ENST00000466342 MYO19Q96H55 970 aa12.16□□□□□ -0.46
SQSTM1-206ENST00000466342 PPP1R9BQ96SB3 815 aa12.16□□□□□ -0.46
SQSTM1-206ENST00000466342 SNRNP25Q9BV90 132 aaKnown RBP12.16□□□□□ -0.46
SQSTM1-206ENST00000466342 PPARGC1AQ9UBK2 798 aaKnown RBP12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms