RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 SLC20A2Q08357 652 aa14.76□□□□□ -0.05
SDC1-204ENST00000429035 SGCGQ13326 291 aa14.76□□□□□ -0.05
SDC1-204ENST00000429035 PDE1CQ14123 709 aaPredicted RBP14.76□□□□□ -0.05
SDC1-204ENST00000429035 FKBP15Q5T1M5 1219 aa14.76□□□□□ -0.05
SDC1-204ENST00000429035 PARGQ86W56 976 aa14.76□□□□□ -0.05
SDC1-204ENST00000429035 ZNF677Q86XU0 584 aa14.76□□□□□ -0.05
SDC1-204ENST00000429035 DCBLD1Q8N8Z6 715 aa14.76□□□□□ -0.05
SDC1-204ENST00000429035 ZNF548Q8NEK5 533 aaPredicted RBP14.76□□□□□ -0.05
SDC1-204ENST00000429035 SNIP1Q8TAD8 396 aaKnown RBP14.76□□□□□ -0.05
SDC1-204ENST00000429035 IFI44Q8TCB0 444 aa14.76□□□□□ -0.05
SDC1-204ENST00000429035 MAPK15Q8TD08 544 aa14.76□□□□□ -0.05
SDC1-204ENST00000429035 GPT2Q8TD30 523 aa14.76□□□□□ -0.05
SDC1-204ENST00000429035 LMX1AQ8TE12 382 aa14.76□□□□□ -0.05
SDC1-204ENST00000429035 FAM172AQ8WUF8 416 aa14.76□□□□□ -0.05
SDC1-204ENST00000429035 RFFLQ8WZ73 363 aa14.76□□□□□ -0.05
SDC1-204ENST00000429035 BMFQ96LC9 184 aa14.76□□□□□ -0.05
SDC1-204ENST00000429035 DEPDC7Q96QD5 511 aa14.76□□□□□ -0.05
SDC1-204ENST00000429035 UBL7Q96S82 380 aaPredicted RBP14.76□□□□□ -0.05
SDC1-204ENST00000429035 LGMNQ99538 433 aa14.76□□□□□ -0.05
SDC1-204ENST00000429035 SELENOOQ9BVL4 669 aa14.76□□□□□ -0.05
SDC1-204ENST00000429035 ABCG4Q9H172 646 aa14.76□□□□□ -0.05
SDC1-204ENST00000429035 SYNDIG1Q9H7V2 258 aa14.76□□□□□ -0.05
SDC1-204ENST00000429035 OR12D3Q9UGF7 316 aa14.76□□□□□ -0.05
SDC1-204ENST00000429035 NOCTQ9UK39 431 aaKnown RBP14.76□□□□□ -0.05
SDC1-204ENST00000429035 LRRK1Q38SD2 2015 aa14.75□□□□□ -0.05
SDC1-204ENST00000429035 IGSF10Q6WRI0 2623 aa14.75□□□□□ -0.05
SDC1-204ENST00000429035 ANKRD36A6QL64 1941 aa14.75□□□□□ -0.05
SDC1-204ENST00000429035 K7ESM1 405 aa14.75□□□□□ -0.05
SDC1-204ENST00000429035 RAMP2O60895 175 aa14.75□□□□□ -0.05
SDC1-204ENST00000429035 CSO75390 466 aaKnown RBP14.75□□□□□ -0.05
SDC1-204ENST00000429035 LRIG2O94898 1065 aa14.75□□□□□ -0.05
SDC1-204ENST00000429035 PRB1P04280 392 aa14.75□□□□□ -0.05
SDC1-204ENST00000429035 MPOP05164 745 aa14.75□□□□□ -0.05
SDC1-204ENST00000429035 CKMT1AP12532 417 aa14.75□□□□□ -0.05
SDC1-204ENST00000429035 RHOQP17081 205 aa14.75□□□□□ -0.05
SDC1-204ENST00000429035 MAPKAPK2P49137 400 aa14.75□□□□□ -0.05
SDC1-204ENST00000429035 DUSP3P51452 185 aaPredicted RBP14.75□□□□□ -0.05
SDC1-204ENST00000429035 GEMIN4P57678 1058 aaKnown RBP14.75□□□□□ -0.05
SDC1-204ENST00000429035 SNRPD1P62314 119 aaKnown RBP14.75□□□□□ -0.05
SDC1-204ENST00000429035 GABREP78334 506 aa14.75□□□□□ -0.05
SDC1-204ENST00000429035 CDR2Q01850 454 aa14.75□□□□□ -0.05
SDC1-204ENST00000429035 FZD2Q14332 565 aa14.75□□□□□ -0.05
SDC1-204ENST00000429035 SYCP1Q15431 976 aa14.75□□□□□ -0.05
SDC1-204ENST00000429035 CDKN3Q16667 212 aa14.75□□□□□ -0.05
SDC1-204ENST00000429035 TBC1D25Q3MII6 688 aa14.75□□□□□ -0.05
SDC1-204ENST00000429035 CCDC14Q49A88 953 aa14.75□□□□□ -0.05
SDC1-204ENST00000429035 ATXN7L2Q5T6C5 722 aaPredicted RBP14.75□□□□□ -0.05
SDC1-204ENST00000429035 BNIPLQ7Z465 357 aa14.75□□□□□ -0.05
SDC1-204ENST00000429035 DCP2Q8IU60 420 aaKnown RBP14.75□□□□□ -0.05
SDC1-204ENST00000429035 CCDC185Q8N715 623 aa14.75□□□□□ -0.05
SDC1-204ENST00000429035 FAM174AQ8TBP5 190 aa14.75□□□□□ -0.05
SDC1-204ENST00000429035 FGF11Q92914 225 aa14.75□□□□□ -0.05
SDC1-204ENST00000429035 ARHGEF2Q92974 986 aaKnown RBP14.75□□□□□ -0.05
SDC1-204ENST00000429035 KLHL32Q96NJ5 620 aa14.75□□□□□ -0.05
SDC1-204ENST00000429035 DUSP23Q9BVJ7 150 aa14.75□□□□□ -0.05
SDC1-204ENST00000429035 RAI2Q9Y5P3 530 aa14.75□□□□□ -0.05
SDC1-204ENST00000429035 CPED1A4D0V7 1026 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 C16orf96A6NNT2 1141 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 FAM72CH0Y354 149 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 BUB1O43683 1085 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 AP1G1O43747 822 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 OPA1O60313 960 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 GIMD1P0DJR0 217 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 JUNDP17535 347 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 MMP8P22894 467 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 ADRA1BP35368 520 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 SOX5P35711 763 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 NSFP46459 744 aaKnown RBP14.74□□□□□ -0.05
SDC1-204ENST00000429035 DEFB133Q30KQ1 61 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 ZNF805Q5CZA5 627 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 ARTNQ5T4W7 220 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 FAM72AQ5TYM5 149 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 MANEALQ5VSG8 457 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 FAM72DQ6L9T8 149 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 CRTC1Q6UUV9 634 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 TRIM72Q6ZMU5 477 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 VPS36Q86VN1 386 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 FAM72BQ86X60 149 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 RBFAQ8N0V3 343 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 NETO2Q8NC67 525 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 OR2AP1Q8NGE2 309 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 CXorf40AQ8TE69 158 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 IFT43Q96FT9 208 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 NCAPGQ9BPX3 1015 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 MAGEB5Q9BZ81 275 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 TMEM248Q9NWD8 314 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 HS3ST3A1Q9Y663 406 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 RP1P56715 2156 aa14.74□□□□□ -0.05
SDC1-204ENST00000429035 C2CD4BA6NLJ0 364 aa14.73□□□□□ -0.05
SDC1-204ENST00000429035 SCAMP1O15126 338 aa14.73□□□□□ -0.05
SDC1-204ENST00000429035 EPHB6O15197 1021 aa14.73□□□□□ -0.05
SDC1-204ENST00000429035 AQP9O43315 295 aa14.73□□□□□ -0.05
SDC1-204ENST00000429035 TSPAN6O43657 245 aa14.73□□□□□ -0.05
SDC1-204ENST00000429035 USP12O75317 370 aa14.73□□□□□ -0.05
SDC1-204ENST00000429035 TMCC1O94876 653 aa14.73□□□□□ -0.05
SDC1-204ENST00000429035 CD160O95971 181 aa14.73□□□□□ -0.05
SDC1-204ENST00000429035 IGSF6O95976 241 aa14.73□□□□□ -0.05
SDC1-204ENST00000429035 GSRP00390 522 aa14.73□□□□□ -0.05
SDC1-204ENST00000429035 CSF2P04141 144 aa14.73□□□□□ -0.05
SDC1-204ENST00000429035 CYP1A1P04798 512 aaPredicted RBP14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms