RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 CCNA2P20248 432 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 GNL1P36915 607 aaPredicted RBP10.83□□□□□ -0.68
USP54-204ENST00000422491 ETFBP38117 255 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 GRIA3P42263 894 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 RGS7P49802 495 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 MLLT10P55197 1068 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 ZBTB17Q13105 803 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 LRRC8EQ6NSJ5 796 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 SLC2A7Q6PXP3 512 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 LCLAT1Q6UWP7 414 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 IGFN1Q86VF2 1251 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 OR13F1Q8NGS4 319 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 C17orf50Q8WW18 174 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 P2RY11Q96G91 374 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 TUBA1CQ9BQE3 449 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 AGPAT4Q9NRZ5 378 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 GMPR2Q9P2T1 348 aaKnown RBP10.83□□□□□ -0.68
USP54-204ENST00000422491 AP4E1Q9UPM8 1137 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 TMEM98Q9Y2Y6 226 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 PSME4Q14997 1843 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 COL11A2P13942 1736 aaPredicted RBP10.83□□□□□ -0.68
USP54-204ENST00000422491 TRPC5OSA6NMA1 111 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 NRP1O14786 923 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 AQP9O43315 295 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 DLX3O60479 287 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 IL18RAPO95256 599 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 ASNSP08243 561 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 ARSAP15289 507 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 MATN1P21941 496 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 EFNA5P52803 228 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 PGGT1BP53609 377 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 CSE1LP55060 971 aaKnown RBP10.82□□□□□ -0.68
USP54-204ENST00000422491 OSTNP61366 133 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 SP2Q02086 613 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 ITGADQ13349 1161 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 OXA1LQ15070 435 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 MAPRE2Q15555 327 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 TARBP2Q15633 366 aaKnown RBP10.82□□□□□ -0.68
USP54-204ENST00000422491 HSDL1Q3SXM5 330 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 FAM45BPQ6NSW5 357 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 GALNT18Q6P9A2 607 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 ABRAXAS1Q6UWZ7 409 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 TRIM50Q86XT4 487 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 OR52K1Q8NGK4 314 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 FAM45AQ8TCE6 357 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 SEPT8Q92599 483 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 TAMM41Q96BW9 452 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 OLFM1Q99784 485 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 C11orf84Q9BUA3 381 aaPredicted RBP10.82□□□□□ -0.68
USP54-204ENST00000422491 C1orf50Q9BV19 199 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 EIF2AQ9BY44 585 aaKnown RBP10.82□□□□□ -0.68
USP54-204ENST00000422491 UPF3AQ9H1J1 476 aaKnown RBP10.82□□□□□ -0.68
USP54-204ENST00000422491 NANOGQ9H9S0 305 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 CD320Q9NPF0 282 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 ATAD3AQ9NVI7 634 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 ANKRD6Q9Y2G4 727 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 TSC22D4Q9Y3Q8 395 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 SPATA31C2B4DYI2 1134 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 MFSD11O43934 449 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 JAK1P23458 1154 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 GLRBP48167 497 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 TMBIM6P55061 237 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 MPP1Q00013 466 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 SLC6A3Q01959 620 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 FASTKQ14296 549 aaKnown RBP10.82□□□□□ -0.68
USP54-204ENST00000422491 SQLEQ14534 574 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 NEDD8Q15843 81 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 ATP6AP1Q15904 470 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 TSTD2Q5T7W7 516 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 DEPDC1Q5TB30 811 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 STYK1Q6J9G0 422 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 PMF1Q6P1K2 205 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 GADL1Q6ZQY3 521 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 FSTL5Q8N475 847 aaPredicted RBP10.82□□□□□ -0.68
USP54-204ENST00000422491 SPPL2BQ8TCT7 592 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 LPAR1Q92633 364 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 CDHR1Q96JP9 859 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 GPR22Q99680 433 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 CCDC167Q9P0B6 97 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 ZNF70Q9UC06 446 aaPredicted RBP10.82□□□□□ -0.68
USP54-204ENST00000422491 SLC39A10Q9ULF5 831 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 GIT1Q9Y2X7 761 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 TRIP11Q15643 1979 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 FAM149AA5PLN7 773 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 ACOX3O15254 700 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 CLPXO76031 633 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 PRKCBP05771 671 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 NFICP08651 508 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 C7P10643 843 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 GOT1P17174 413 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 MAP4P27816 1152 aaKnown RBP10.82□□□□□ -0.68
USP54-204ENST00000422491 POLR2IP36954 125 aaKnown RBP10.82□□□□□ -0.68
USP54-204ENST00000422491 KPNA1P52294 538 aaPredicted RBP10.82□□□□□ -0.68
USP54-204ENST00000422491 GRM3Q14832 879 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 ANO4Q32M45 955 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 AGKQ53H12 422 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 HACD2Q6Y1H2 254 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 TMEM192Q8IY95 271 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 OFCC1Q8IZS5 231 aa10.82□□□□□ -0.68
USP54-204ENST00000422491 CENPLQ8N0S6 344 aaPredicted RBP10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 110.4 ms