RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 LRRC31Q6UY01 552 aa8.25□□□□□ -1.09
VIM-202ENST00000421459 KYAT3Q6YP21 454 aaKnown RBP8.25□□□□□ -1.09
VIM-202ENST00000421459 FAM72BQ86X60 149 aa8.25□□□□□ -1.09
VIM-202ENST00000421459 RYBPQ8N488 228 aaPredicted RBP8.25□□□□□ -1.09
VIM-202ENST00000421459 FAM181AQ8N9Y4 354 aa8.25□□□□□ -1.09
VIM-202ENST00000421459 CPA5Q8WXQ8 436 aa8.25□□□□□ -1.09
VIM-202ENST00000421459 TTC9Q92623 222 aa8.25□□□□□ -1.09
VIM-202ENST00000421459 FEM1CQ96JP0 617 aa8.25□□□□□ -1.09
VIM-202ENST00000421459 C1orf74Q96LT6 269 aa8.25□□□□□ -1.09
VIM-202ENST00000421459 CCDC114Q96M63 670 aa8.25□□□□□ -1.09
VIM-202ENST00000421459 CLPBQ9H078 707 aa8.25□□□□□ -1.09
VIM-202ENST00000421459 ATP13A1Q9HD20 1204 aa8.25□□□□□ -1.09
VIM-202ENST00000421459 MBNL1Q9NR56 388 aaKnown RBP8.25□□□□□ -1.09
VIM-202ENST00000421459 WDR70Q9NW82 654 aa8.25□□□□□ -1.09
VIM-202ENST00000421459 HECAQ9UBI9 543 aaPredicted RBP8.25□□□□□ -1.09
VIM-202ENST00000421459 DNAI1Q9UI46 699 aa8.25□□□□□ -1.09
VIM-202ENST00000421459 ENTPD2Q9Y5L3 495 aa8.25□□□□□ -1.09
VIM-202ENST00000421459 NYNRINQ9P2P1 1898 aaKnown RBP8.25□□□□□ -1.09
VIM-202ENST00000421459 BSNQ9UPA5 3926 aa8.25□□□□□ -1.09
VIM-202ENST00000421459 HELZ2Q9BYK8 2649 aaKnown RBP8.25□□□□□ -1.09
VIM-202ENST00000421459 DOCK9Q9BZ29 2069 aa8.25□□□□□ -1.09
VIM-202ENST00000421459 ILVBLA1L0T0 632 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 NEMP2A6NFY4 417 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 J3QKU1 62 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 ERVH48-1M5A8F1 160 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 KRIT1O00522 736 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 FPGTO14772 594 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 EFSO43281 561 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 MMP20O60882 483 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 DXOO77932 396 aaKnown RBP8.24□□□□□ -1.09
VIM-202ENST00000421459 GP1BAP07359 652 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 MMEP08473 750 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 NME1P15531 152 aaKnown RBP8.24□□□□□ -1.09
VIM-202ENST00000421459 ITGB7P26010 798 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 MTIF2P46199 727 aaKnown RBP8.24□□□□□ -1.09
VIM-202ENST00000421459 GABRB2P47870 512 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 DUSP3P51452 185 aaPredicted RBP8.24□□□□□ -1.09
VIM-202ENST00000421459 CLCN6P51797 869 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 PDX1P52945 283 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 ERVPABLB-1P60509 514 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 ATP11AP98196 1134 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 GNA12Q03113 381 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 SRSF6Q13247 344 aaKnown RBP8.24□□□□□ -1.09
VIM-202ENST00000421459 SGCGQ13326 291 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 RAPGEF1Q13905 1077 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 CDO1Q16878 200 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 C15orf59Q2T9L4 293 aaPredicted RBP8.24□□□□□ -1.09
VIM-202ENST00000421459 SLC25A52Q3SY17 297 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 PRRT3Q5FWE3 981 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 ZCCHC8Q6NZY4 707 aaKnown RBP8.24□□□□□ -1.09
VIM-202ENST00000421459 BNIPLQ7Z465 357 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 VPS36Q86VN1 386 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 PARGQ86W56 976 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 SLC35F3Q8IY50 421 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 FAM71AQ8IYT1 594 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 LSM14AQ8ND56 463 aaKnown RBP8.24□□□□□ -1.09
VIM-202ENST00000421459 C18orf8Q96DM3 657 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 PGAP3Q96FM1 320 aaPredicted RBP8.24□□□□□ -1.09
VIM-202ENST00000421459 IFT43Q96FT9 208 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 PPP1R16AQ96I34 528 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 KLHL32Q96NJ5 620 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 SLC46A1Q96NT5 459 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 DUSP23Q9BVJ7 150 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 C1QTNF2Q9BXJ5 285 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 ZYG11BQ9C0D3 744 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 KLC2Q9H0B6 622 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 PDCL3Q9H2J4 239 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 SYNDIG1Q9H7V2 258 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 RWDD2AQ9UIY3 292 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 RABGEF1Q9UJ41 708 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 TMEM59LQ9UK28 342 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 FHOD1Q9Y613 1164 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 SHROOM3Q8TF72 1996 aa8.24□□□□□ -1.09
VIM-202ENST00000421459 EME2A4GXA9 379 aaPredicted RBP8.23□□□□□ -1.09
VIM-202ENST00000421459 NEMP1O14524 444 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 YY2O15391 372 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 AP1G1O43747 822 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 TNFSF15O95150 251 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 FGFR1OPO95684 399 aaKnown RBP8.23□□□□□ -1.09
VIM-202ENST00000421459 UGT2B4P06133 528 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 HGFP14210 728 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 CYP11B1P15538 503 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 RBMS1P29558 406 aaKnown RBP8.23□□□□□ -1.09
VIM-202ENST00000421459 IGFALSP35858 605 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 RABIFP47224 123 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 PFN3P60673 137 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 VAC14Q08AM6 782 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 CCDC15Q0P6D6 951 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 NR0B2Q15466 257 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 ZSCAN23Q3MJ62 389 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 NAA35Q5VZE5 725 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 KCTD16Q68DU8 428 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 KIAA1161Q6NSJ0 714 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 RETSATQ6NUM9 610 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 RWDD4Q6NW29 188 aaKnown RBP8.23□□□□□ -1.09
VIM-202ENST00000421459 B3GNT8Q7Z7M8 397 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 NOP9Q86U38 636 aaKnown RBP8.23□□□□□ -1.09
VIM-202ENST00000421459 DCP2Q8IU60 420 aaKnown RBP8.23□□□□□ -1.09
VIM-202ENST00000421459 SFTPA2Q8IWL1 248 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 PHACTR4Q8IZ21 702 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms