RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 PRRC2BQ5JSZ5 2229 aaKnown RBP6.74□□□□□ -1.33
VPS41-204ENST00000413141 SPTBN5Q9NRC6 3674 aaKnown RBP6.74□□□□□ -1.33
VPS41-204ENST00000413141 DOCK8Q8NF50 2099 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 A0A087WUV0 522 aaPredicted RBP6.74□□□□□ -1.33
VPS41-204ENST00000413141 TTC24A2A3L6 582 aaPredicted RBP6.74□□□□□ -1.33
VPS41-204ENST00000413141 H3BQF6 201 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 AP3B1O00203 1094 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 PMPCBO75439 489 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 NFATC1O95644 943 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 AGTP01019 485 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 PABPC1P11940 636 aaKnown RBP6.74□□□□□ -1.33
VPS41-204ENST00000413141 LAMP2P13473 410 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 ARSAP15289 507 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 CR2P20023 1033 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 MGAT1P26572 445 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 GBP2P32456 591 aaPredicted RBP6.74□□□□□ -1.33
VPS41-204ENST00000413141 PHBP35232 272 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 WNT3AP56704 352 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 SESN2P58004 480 aaPredicted RBP6.74□□□□□ -1.33
VPS41-204ENST00000413141 RHOAP61586 193 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 ITKQ08881 620 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 IFFO1Q0D2I5 559 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 CDH17Q12864 832 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 PDAP1Q13442 181 aaKnown RBP6.74□□□□□ -1.33
VPS41-204ENST00000413141 IHHQ14623 411 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 PDGFRLQ15198 375 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 CYTH1Q15438 398 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 PCSK7Q16549 785 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 GAB4Q2WGN9 574 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 INO80DQ53TQ3 878 aaPredicted RBP6.74□□□□□ -1.33
VPS41-204ENST00000413141 CEP85LQ5SZL2 805 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 TANGO2Q6ICL3 276 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 RETSATQ6NUM9 610 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 KIAA0907Q7Z7F0 614 aaPredicted RBP6.74□□□□□ -1.33
VPS41-204ENST00000413141 METTL3Q86U44 580 aaKnown RBP6.74□□□□□ -1.33
VPS41-204ENST00000413141 C12orf40Q86WS4 652 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 ETFBKMTQ8IXQ9 262 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 AHI1Q8N157 1196 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 DNAAF3Q8N9W5 541 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 ST13P5Q8NFI4 369 aaPredicted RBP6.74□□□□□ -1.33
VPS41-204ENST00000413141 UHMK1Q8TAS1 419 aaKnown RBP6.74□□□□□ -1.33
VPS41-204ENST00000413141 SUSD6Q92537 303 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 ATP2A3Q93084 1043 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 E2F7Q96AV8 911 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 ELSPBP1Q96BH3 223 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 ZBTB9Q96C00 473 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 STAMBPL1Q96FJ0 436 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 LRCH3Q96II8 777 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 ZFYVE19Q96K21 471 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 EXOC2Q96KP1 924 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 SIGLEC10Q96LC7 697 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 FAM161BQ96MY7 647 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 NECTIN4Q96NY8 510 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 NUDCD1Q96RS6 583 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 GAS2L1Q99501 681 aaPredicted RBP6.74□□□□□ -1.33
VPS41-204ENST00000413141 EBNA1BP2Q99848 306 aaKnown RBP6.74□□□□□ -1.33
VPS41-204ENST00000413141 SEMA3CQ99985 751 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 KXD1Q9BQD3 176 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 FAM83CQ9BQN1 747 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 SLC2A11Q9BYW1 496 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 EBF3Q9H4W6 596 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 VPS37BQ9H9H4 285 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 PLAC1Q9HBJ0 212 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 MED4Q9NPJ6 270 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 HPS4Q9NQG7 708 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 THG1LQ9NWX6 298 aaKnown RBP6.74□□□□□ -1.33
VPS41-204ENST00000413141 SYBUQ9NX95 663 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 FAM53CQ9NYF3 392 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 ZC3H7BQ9UGR2 993 aaKnown RBP6.74□□□□□ -1.33
VPS41-204ENST00000413141 CD207Q9UJ71 328 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 FBXO10Q9UK96 956 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 FCF1Q9Y324 198 aaKnown RBP6.74□□□□□ -1.33
VPS41-204ENST00000413141 USP15Q9Y4E8 981 aaPredicted RBP6.74□□□□□ -1.33
VPS41-204ENST00000413141 MYLKQ15746 1914 aa6.74□□□□□ -1.33
VPS41-204ENST00000413141 COL4A2P08572 1712 aa6.73□□□□□ -1.33
VPS41-204ENST00000413141 TRIOBPQ9H2D6 2365 aa6.73□□□□□ -1.33
VPS41-204ENST00000413141 TCRBV9S1A1TA0A576 114 aa6.73□□□□□ -1.33
VPS41-204ENST00000413141 OTOL1A6NHN0 477 aaPredicted RBP6.73□□□□□ -1.33
VPS41-204ENST00000413141 SDR42E2A6NKP2 422 aa6.73□□□□□ -1.33
VPS41-204ENST00000413141 K7ERQ8 282 aa6.73□□□□□ -1.33
VPS41-204ENST00000413141 TRIM24O15164 1050 aa6.73□□□□□ -1.33
VPS41-204ENST00000413141 INSIG1O15503 277 aa6.73□□□□□ -1.33
VPS41-204ENST00000413141 OPA1O60313 960 aa6.73□□□□□ -1.33
VPS41-204ENST00000413141 ECI2O75521 394 aa6.73□□□□□ -1.33
VPS41-204ENST00000413141 SPAG6O75602 509 aa6.73□□□□□ -1.33
VPS41-204ENST00000413141 SYF2O95926 243 aaKnown RBP6.73□□□□□ -1.33
VPS41-204ENST00000413141 MT-CO1P00395 513 aa6.73□□□□□ -1.33
VPS41-204ENST00000413141 IVLP07476 585 aa6.73□□□□□ -1.33
VPS41-204ENST00000413141 SERPINF2P08697 491 aa6.73□□□□□ -1.33
VPS41-204ENST00000413141 GSTA2P09210 222 aa6.73□□□□□ -1.33
VPS41-204ENST00000413141 ATXN1LP0C7T5 689 aaKnown RBP6.73□□□□□ -1.33
VPS41-204ENST00000413141 SRCP12931 536 aa6.73□□□□□ -1.33
VPS41-204ENST00000413141 PSMC3P17980 439 aa6.73□□□□□ -1.33
VPS41-204ENST00000413141 PGAM1P18669 254 aa6.73□□□□□ -1.33
VPS41-204ENST00000413141 SSTR1P30872 391 aa6.73□□□□□ -1.33
VPS41-204ENST00000413141 STX2P32856 288 aa6.73□□□□□ -1.33
VPS41-204ENST00000413141 CTSOP43234 321 aaPredicted RBP6.73□□□□□ -1.33
VPS41-204ENST00000413141 CHRNA4P43681 627 aa6.73□□□□□ -1.33
VPS41-204ENST00000413141 DGKGP49619 791 aa6.73□□□□□ -1.33
VPS41-204ENST00000413141 STK19P49842 368 aaPredicted RBP6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms