RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 AFMIDQ63HM1 303 aa19.37■□□□□ 0.69
SF3A1-202ENST00000411423 ALKBH5Q6P6C2 394 aaKnown RBP19.37■□□□□ 0.69
SF3A1-202ENST00000411423 ARHGAP36Q6ZRI8 547 aa19.37■□□□□ 0.69
SF3A1-202ENST00000411423 RFX8Q6ZV50 586 aa19.37■□□□□ 0.69
SF3A1-202ENST00000411423 PRPF39Q86UA1 669 aaKnown RBP19.37■□□□□ 0.69
SF3A1-202ENST00000411423 ZNF354CQ86Y25 554 aa19.37■□□□□ 0.69
SF3A1-202ENST00000411423 RYBPQ8N488 228 aaPredicted RBP19.37■□□□□ 0.69
SF3A1-202ENST00000411423 MRPL47Q9HD33 250 aaKnown RBP19.37■□□□□ 0.69
SF3A1-202ENST00000411423 CWC15Q9P013 229 aaKnown RBP19.37■□□□□ 0.69
SF3A1-202ENST00000411423 ITM2BQ9Y287 266 aa19.37■□□□□ 0.69
SF3A1-202ENST00000411423 FADS3Q9Y5Q0 445 aa19.37■□□□□ 0.69
SF3A1-202ENST00000411423 KNL1Q8NG31 2342 aa19.36■□□□□ 0.69
SF3A1-202ENST00000411423 A0A1B0GTQ1 180 aa19.36■□□□□ 0.69
SF3A1-202ENST00000411423 KRIT1O00522 736 aa19.36■□□□□ 0.69
SF3A1-202ENST00000411423 SLC31A1O15431 190 aa19.36■□□□□ 0.69
SF3A1-202ENST00000411423 PRPSAP2O60256 369 aa19.36■□□□□ 0.69
SF3A1-202ENST00000411423 HTR7P34969 479 aa19.36■□□□□ 0.69
SF3A1-202ENST00000411423 PCK1P35558 622 aa19.36■□□□□ 0.69
SF3A1-202ENST00000411423 PAPOLAP51003 745 aaKnown RBP19.36■□□□□ 0.69
SF3A1-202ENST00000411423 NEK3P51956 506 aa19.36■□□□□ 0.69
SF3A1-202ENST00000411423 C21orf59P57076 290 aa19.36■□□□□ 0.69
SF3A1-202ENST00000411423 DPYSQ14117 519 aa19.36■□□□□ 0.69
SF3A1-202ENST00000411423 NFKBIBQ15653 356 aa19.36■□□□□ 0.69
SF3A1-202ENST00000411423 TRIP6Q15654 476 aaKnown RBP19.36■□□□□ 0.69
SF3A1-202ENST00000411423 ASTE1Q2TB18 679 aaPredicted RBP19.36■□□□□ 0.69
SF3A1-202ENST00000411423 PARP15Q460N3 678 aa19.36■□□□□ 0.69
SF3A1-202ENST00000411423 TMEM259Q4ZIN3 620 aa19.36■□□□□ 0.69
SF3A1-202ENST00000411423 PPP6R3Q5H9R7 873 aaPredicted RBP19.36■□□□□ 0.69
SF3A1-202ENST00000411423 CCDC122Q5T0U0 273 aa19.36■□□□□ 0.69
SF3A1-202ENST00000411423 HORMAD1Q86X24 394 aa19.36■□□□□ 0.69
SF3A1-202ENST00000411423 TMEM145Q8NBT3 493 aa19.36■□□□□ 0.69
SF3A1-202ENST00000411423 IQCDQ96DY2 449 aa19.36■□□□□ 0.69
SF3A1-202ENST00000411423 EXOC2Q96KP1 924 aa19.36■□□□□ 0.69
SF3A1-202ENST00000411423 NUP85Q9BW27 656 aa19.36■□□□□ 0.69
SF3A1-202ENST00000411423 PACSIN1Q9BY11 444 aa19.36■□□□□ 0.69
SF3A1-202ENST00000411423 DYRK4Q9NR20 520 aa19.36■□□□□ 0.69
SF3A1-202ENST00000411423 ETNK2Q9NVF9 386 aa19.36■□□□□ 0.69
SF3A1-202ENST00000411423 ANGPTL2Q9UKU9 493 aa19.36■□□□□ 0.69
SF3A1-202ENST00000411423 PCDHGB2Q9Y5G2 931 aa19.36■□□□□ 0.69
SF3A1-202ENST00000411423 TLR4O00206 839 aa19.35■□□□□ 0.69
SF3A1-202ENST00000411423 UGT2B4P06133 528 aa19.35■□□□□ 0.69
SF3A1-202ENST00000411423 DESP17661 470 aa19.35■□□□□ 0.69
SF3A1-202ENST00000411423 ITIH2P19823 946 aa19.35■□□□□ 0.69
SF3A1-202ENST00000411423 RGRP47804 291 aa19.35■□□□□ 0.69
SF3A1-202ENST00000411423 NDST2P52849 883 aa19.35■□□□□ 0.69
SF3A1-202ENST00000411423 GEMIN4P57678 1058 aaKnown RBP19.35■□□□□ 0.69
SF3A1-202ENST00000411423 SLC25A11Q02978 314 aaKnown RBP19.35■□□□□ 0.69
SF3A1-202ENST00000411423 INO80DQ53TQ3 878 aaPredicted RBP19.35■□□□□ 0.69
SF3A1-202ENST00000411423 LRRC73Q5JTD7 316 aa19.35■□□□□ 0.69
SF3A1-202ENST00000411423 SPECC1LQ69YQ0 1117 aa19.35■□□□□ 0.69
SF3A1-202ENST00000411423 GATAD2AQ86YP4 633 aa19.35■□□□□ 0.69
SF3A1-202ENST00000411423 VSTM4Q8IW00 320 aa19.35■□□□□ 0.69
SF3A1-202ENST00000411423 SETD7Q8WTS6 366 aaKnown RBP19.35■□□□□ 0.69
SF3A1-202ENST00000411423 PPP1R16AQ96I34 528 aa19.35■□□□□ 0.69
SF3A1-202ENST00000411423 KLHL32Q96NJ5 620 aa19.35■□□□□ 0.69
SF3A1-202ENST00000411423 ELF4Q99607 663 aaPredicted RBP19.35■□□□□ 0.69
SF3A1-202ENST00000411423 DNAJC7Q99615 494 aa19.35■□□□□ 0.69
SF3A1-202ENST00000411423 ZWILCHQ9H900 591 aa19.35■□□□□ 0.69
SF3A1-202ENST00000411423 TOR4AQ9NXH8 423 aa19.35■□□□□ 0.69
SF3A1-202ENST00000411423 ANAPC7Q9UJX3 599 aa19.35■□□□□ 0.69
SF3A1-202ENST00000411423 DMTF1Q9Y222 760 aa19.35■□□□□ 0.69
SF3A1-202ENST00000411423 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP19.35■□□□□ 0.692e-8■□□□□ 11.3
SF3A1-202ENST00000411423 ZSCAN5CA6NGD5 496 aaPredicted RBP19.34■□□□□ 0.69
SF3A1-202ENST00000411423 C16orf96A6NNT2 1141 aa19.34■□□□□ 0.69
SF3A1-202ENST00000411423 RAD51BO15315 384 aa19.34■□□□□ 0.69
SF3A1-202ENST00000411423 HYAL3O43820 417 aaPredicted RBP19.34■□□□□ 0.69
SF3A1-202ENST00000411423 PRAMEF11O60813 436 aa19.34■□□□□ 0.69
SF3A1-202ENST00000411423 RARAP10276 462 aa19.34■□□□□ 0.69
SF3A1-202ENST00000411423 CCT8P50990 548 aa19.34■□□□□ 0.69
SF3A1-202ENST00000411423 CLDN2P57739 230 aa19.34■□□□□ 0.69
SF3A1-202ENST00000411423 SNRPD1P62314 119 aaKnown RBP19.34■□□□□ 0.69
SF3A1-202ENST00000411423 DPYSL2Q16555 572 aa19.34■□□□□ 0.69
SF3A1-202ENST00000411423 SETMARQ53H47 684 aaPredicted RBP19.34■□□□□ 0.69
SF3A1-202ENST00000411423 ZNF805Q5CZA5 627 aa19.34■□□□□ 0.69
SF3A1-202ENST00000411423 NEK5Q6P3R8 708 aa19.34■□□□□ 0.69
SF3A1-202ENST00000411423 KDM7AQ6ZMT4 941 aa19.34■□□□□ 0.69
SF3A1-202ENST00000411423 GCNT7Q6ZNI0 430 aa19.34■□□□□ 0.69
SF3A1-202ENST00000411423 SLCO6A1Q86UG4 719 aa19.34■□□□□ 0.69
SF3A1-202ENST00000411423 PSTKQ8IV42 348 aaKnown RBP19.34■□□□□ 0.69
SF3A1-202ENST00000411423 NIPA2Q8N8Q9 360 aa19.34■□□□□ 0.69
SF3A1-202ENST00000411423 PNPLA1Q8N8W4 532 aa19.34■□□□□ 0.69
SF3A1-202ENST00000411423 MFSD2AQ8NA29 543 aa19.34■□□□□ 0.69
SF3A1-202ENST00000411423 HSPH1Q92598 858 aa19.34■□□□□ 0.69
SF3A1-202ENST00000411423 NSMCE3Q96MG7 304 aa19.34■□□□□ 0.69
SF3A1-202ENST00000411423 UBA2Q9UBT2 640 aaPredicted RBP19.34■□□□□ 0.69
SF3A1-202ENST00000411423 TPX2Q9ULW0 747 aaKnown RBP19.34■□□□□ 0.69
SF3A1-202ENST00000411423 ASPMQ8IZT6 3477 aa19.34■□□□□ 0.69
SF3A1-202ENST00000411423 EIF3CLB5ME19 914 aaKnown RBP19.33■□□□□ 0.68
SF3A1-202ENST00000411423 PRAMEF26H0Y7S4 382 aa19.33■□□□□ 0.68
SF3A1-202ENST00000411423 FLRT2O43155 660 aa19.33■□□□□ 0.68
SF3A1-202ENST00000411423 PCDHGA12O60330 932 aa19.33■□□□□ 0.68
SF3A1-202ENST00000411423 PCDH8O95206 1070 aa19.33■□□□□ 0.68
SF3A1-202ENST00000411423 PIGNO95427 931 aa19.33■□□□□ 0.68
SF3A1-202ENST00000411423 POP4O95707 220 aaKnown RBP19.33■□□□□ 0.68
SF3A1-202ENST00000411423 AMPD1P23109 780 aa19.33■□□□□ 0.68
SF3A1-202ENST00000411423 RHOAP61586 193 aa19.33■□□□□ 0.68
SF3A1-202ENST00000411423 BNIP3Q12983 259 aa19.33■□□□□ 0.68
SF3A1-202ENST00000411423 ACAP1Q15027 740 aa19.33■□□□□ 0.68
SF3A1-202ENST00000411423 FBXL19Q6PCT2 694 aa19.33■□□□□ 0.68
SF3A1-202ENST00000411423 POLNQ7Z5Q5 900 aa19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms