RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 ARL8AQ96BM9 186 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 STAMBPL1Q96FJ0 436 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 IFT43Q96FT9 208 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 IMP4Q96G21 291 aaKnown RBP3.76□□□□□ -1.81
RTN4-208ENST00000404909 SIGLEC10Q96LC7 697 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 ZNF599Q96NL3 588 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 GAS2L1Q99501 681 aaPredicted RBP3.76□□□□□ -1.81
RTN4-208ENST00000404909 CCDC77Q9BR77 488 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 CIPCQ9C0C6 399 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 POMKQ9H5K3 350 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 NOD2Q9HC29 1040 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 HAUS2Q9NVX0 235 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 SYBUQ9NX95 663 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 IL1RAPL1Q9NZN1 696 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 GGA2Q9UJY4 613 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 INTS6Q9UL03 887 aaKnown RBP3.76□□□□□ -1.81
RTN4-208ENST00000404909 OR51B4Q9Y5P0 310 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 TEX264Q9Y6I9 313 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 A0A0C4DFX4 3053 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 C2orf16Q68DN1 1984 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 ATG2AQ2TAZ0 1938 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 A0A087WUV0 522 aaPredicted RBP3.76□□□□□ -1.81
RTN4-208ENST00000404909 OTOL1A6NHN0 477 aaPredicted RBP3.76□□□□□ -1.81
RTN4-208ENST00000404909 SOX1O00570 391 aaPredicted RBP3.76□□□□□ -1.81
RTN4-208ENST00000404909 RASGRF2O14827 1237 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 RNF40O75150 1001 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 CD160O95971 181 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 ADH1CP00326 375 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 PENKP01210 267 aaPredicted RBP3.76□□□□□ -1.81
RTN4-208ENST00000404909 CYP17A1P05093 508 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 SERPINF2P08697 491 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 NUDT17P0C025 328 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 ADH5P11766 374 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 MLNP12872 115 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 OAS2P29728 719 aaKnown RBP3.76□□□□□ -1.81
RTN4-208ENST00000404909 PHBP35232 272 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 LTBRP36941 435 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 EIF3BP55884 814 aaKnown RBP3.76□□□□□ -1.81
RTN4-208ENST00000404909 MPP3Q13368 585 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 SEPT6Q14141 434 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 EFTUD2Q15029 972 aaKnown RBP eCLIP3.76□□□□□ -1.814e-14■■■■■ 28.8
RTN4-208ENST00000404909 CYTH1Q15438 398 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 EML3Q32P44 896 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 FUT11Q495W5 492 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 PITRM1Q5JRX3 1037 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 SPDYCQ5MJ68 293 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 PARM1Q6UWI2 310 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 LRIG3Q6UXM1 1119 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 RELL1Q8IUW5 271 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 CTAGE3PQ8IX95 158 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 SH2D3CQ8N5H7 860 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 SORCS1Q8WY21 1168 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 OTUB2Q96DC9 234 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 ALG14Q96F25 216 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 MRGPRX2Q96LB1 330 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 RIPOR3Q96MK2 946 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 PSKH2Q96QS6 385 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 EBNA1BP2Q99848 306 aaKnown RBP3.76□□□□□ -1.81
RTN4-208ENST00000404909 S1PR5Q9H228 398 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 TNKS2Q9H2K2 1166 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 SCUBE2Q9NQ36 999 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 THG1LQ9NWX6 298 aaKnown RBP3.76□□□□□ -1.81
RTN4-208ENST00000404909 GTSE1Q9NYZ3 720 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 CTNNAL1Q9UBT7 734 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 RPS6KL1Q9Y6S9 549 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 TCRBV9S1A1TA0A576 114 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 INSIG1O15503 277 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 PSMD3O43242 534 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 CACNG3O60359 315 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 ZMPSTE24O75844 475 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 SUN1O94901 812 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 MMP2P08253 660 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 PIRTP0C851 137 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 PABPC1P11940 636 aaKnown RBP3.76□□□□□ -1.81
RTN4-208ENST00000404909 LAMP2P13473 410 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 KCNA5P22460 613 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 MAGEA3P43357 314 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 RGS19P49795 217 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 GALNT3Q14435 633 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 IHHQ14623 411 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 RFTN1Q14699 578 aaPredicted RBP3.76□□□□□ -1.81
RTN4-208ENST00000404909 UNC5AQ6ZN44 842 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 C12orf40Q86WS4 652 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 UNC5BQ8IZJ1 945 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 ARRDC2Q8TBH0 407 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 CYB5D2Q8WUJ1 264 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 FGF14Q92915 247 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 ATP2A3Q93084 1043 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 FATE1Q969F0 183 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 ACDQ96AP0 544 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 PKNOX2Q96KN3 472 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 PPP1R2P1Q96PQ5 205 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 XPO6Q96QU8 1125 aaKnown RBP3.76□□□□□ -1.81
RTN4-208ENST00000404909 MGME1Q9BQP7 344 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 RPP25Q9BUL9 199 aaKnown RBP3.76□□□□□ -1.81
RTN4-208ENST00000404909 MED4Q9NPJ6 270 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 CHRAC1Q9NRG0 131 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 VPS45Q9NRW7 570 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 OGFRQ9NZT2 677 aa3.76□□□□□ -1.81
RTN4-208ENST00000404909 LMCD1Q9NZU5 365 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms