RNA–Protein interactions for RNA: ENST00000404484.8

TPM1-208, Transcript of tropomyosin 1, human

TSL 1 (best) BASIC

Gene TPM1, Length 1,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-208	ENST00000404484	SLC9A3R1	O14745	358 aa	Predicted RBP	21.31	■■□□□ 1
TPM1-208	ENST00000404484	CDH16	O75309	829 aa		21.31	■■□□□ 1
TPM1-208	ENST00000404484	SSTR1	P30872	391 aa		21.31	■■□□□ 1
TPM1-208	ENST00000404484	GRIA1	P42261	906 aa		21.31	■■□□□ 1
TPM1-208	ENST00000404484	NPY2R	P49146	381 aa		21.31	■■□□□ 1
TPM1-208	ENST00000404484	ITK	Q08881	620 aa		21.31	■■□□□ 1
TPM1-208	ENST00000404484	CDH17	Q12864	832 aa		21.31	■■□□□ 1
TPM1-208	ENST00000404484	MTM1	Q13496	603 aa		21.31	■■□□□ 1
TPM1-208	ENST00000404484	CAPN12	Q6ZSI9	719 aa		21.31	■■□□□ 1
TPM1-208	ENST00000404484	OR52K2	Q8NGK3	314 aa		21.31	■■□□□ 1
TPM1-208	ENST00000404484	EPS8L3	Q8TE67	593 aa	Known RBP	21.31	■■□□□ 1
TPM1-208	ENST00000404484	CFAP36	Q96G28	342 aa		21.31	■■□□□ 1
TPM1-208	ENST00000404484	TBL1Y	Q9BQ87	522 aa		21.31	■■□□□ 1
TPM1-208	ENST00000404484	C1QTNF1	Q9BXJ1	281 aa		21.31	■■□□□ 1
TPM1-208	ENST00000404484	SAMD15	Q9P1V8	674 aa		21.31	■■□□□ 1
TPM1-208	ENST00000404484	VPS18	Q9P253	973 aa		21.31	■■□□□ 1
TPM1-208	ENST00000404484	SLC24A2	Q9UI40	661 aa		21.31	■■□□□ 1
TPM1-208	ENST00000404484	FAM86C2P	A6NEL3	165 aa		21.31	■■□□□ 1
TPM1-208	ENST00000404484	SESN2	P58004	480 aa	Predicted RBP	21.31	■■□□□ 1
TPM1-208	ENST00000404484	SPARCL1	Q14515	664 aa		21.31	■■□□□ 1
TPM1-208	ENST00000404484	RNF43	Q68DV7	783 aa		21.31	■■□□□ 1
TPM1-208	ENST00000404484	CASC4	Q6P4E1	433 aa		21.31	■■□□□ 1
TPM1-208	ENST00000404484	PARM1	Q6UWI2	310 aa		21.31	■■□□□ 1
TPM1-208	ENST00000404484	TDRP	Q86YL5	185 aa		21.31	■■□□□ 1
TPM1-208	ENST00000404484	IGDCC3	Q8IVU1	814 aa		21.31	■■□□□ 1
TPM1-208	ENST00000404484	OR52K1	Q8NGK4	314 aa		21.31	■■□□□ 1
TPM1-208	ENST00000404484	CYTH2	Q99418	400 aa		21.31	■■□□□ 1
TPM1-208	ENST00000404484	RPP25	Q9BUL9	199 aa	Known RBP	21.31	■■□□□ 1
TPM1-208	ENST00000404484	CINP	Q9BW66	212 aa	Predicted RBP	21.31	■■□□□ 1
TPM1-208	ENST00000404484	FSD1L	Q9BXM9	530 aa		21.31	■■□□□ 1
TPM1-208	ENST00000404484	ACSS3	Q9H6R3	686 aa		21.31	■■□□□ 1
TPM1-208	ENST00000404484	GDE1	Q9NZC3	331 aa		21.31	■■□□□ 1
TPM1-208	ENST00000404484	BCCIP	Q9P287	314 aa	Known RBP eCLIP	21.31	■■□□□ 1
TPM1-208	ENST00000404484	VPS28	Q9UK41	221 aa		21.31	■■□□□ 1
TPM1-208	ENST00000404484	SMIM23	A6NLE4	172 aa		21.3	■■□□□ 1
TPM1-208	ENST00000404484	CBX4	O00257	560 aa		21.3	■■□□□ 1
TPM1-208	ENST00000404484	PRAMEF12	O95522	483 aa		21.3	■■□□□ 1
TPM1-208	ENST00000404484	AGT	P01019	485 aa		21.3	■■□□□ 1
TPM1-208	ENST00000404484	PGAM1	P18669	254 aa		21.3	■■□□□ 1
TPM1-208	ENST00000404484	CES1	P23141	567 aa		21.3	■■□□□ 1
TPM1-208	ENST00000404484	MGAT1	P26572	445 aa		21.3	■■□□□ 1
TPM1-208	ENST00000404484	GEMIN4	P57678	1058 aa	Known RBP	21.3	■■□□□ 1
TPM1-208	ENST00000404484	TDG	Q13569	410 aa		21.3	■■□□□ 1
TPM1-208	ENST00000404484	SLC12A1	Q13621	1099 aa		21.3	■■□□□ 1
TPM1-208	ENST00000404484	HTR4	Q13639	388 aa		21.3	■■□□□ 1
TPM1-208	ENST00000404484	RASA2	Q15283	850 aa		21.3	■■□□□ 1
TPM1-208	ENST00000404484	LONRF1	Q17RB8	773 aa		21.3	■■□□□ 1
TPM1-208	ENST00000404484	ARMC3	Q5W041	872 aa		21.3	■■□□□ 1
TPM1-208	ENST00000404484	ARID3B	Q8IVW6	561 aa	Predicted RBP	21.3	■■□□□ 1
TPM1-208	ENST00000404484	AGGF1	Q8N302	714 aa	eCLIP	21.3	■■□□□ 1
TPM1-208	ENST00000404484	SLC44A3	Q8N4M1	653 aa		21.3	■■□□□ 1
TPM1-208	ENST00000404484	CELF5	Q8N6W0	485 aa	Known RBP	21.3	■■□□□ 1
TPM1-208	ENST00000404484	DCAF4L2	Q8NA75	395 aa		21.3	■■□□□ 1
TPM1-208	ENST00000404484	IPMK	Q8NFU5	416 aa		21.3	■■□□□ 1
TPM1-208	ENST00000404484	SPATA22	Q8NHS9	363 aa		21.3	■■□□□ 1
TPM1-208	ENST00000404484	FIBIN	Q8TAL6	211 aa		21.3	■■□□□ 1
TPM1-208	ENST00000404484	FAM76A	Q8TAV0	307 aa		21.3	■■□□□ 1
TPM1-208	ENST00000404484	FGF14	Q92915	247 aa		21.3	■■□□□ 1
TPM1-208	ENST00000404484	ZSWIM3	Q96MP5	696 aa		21.3	■■□□□ 1
TPM1-208	ENST00000404484	PSKH2	Q96QS6	385 aa		21.3	■■□□□ 1
TPM1-208	ENST00000404484	FEM1A	Q9BSK4	669 aa		21.3	■■□□□ 1
TPM1-208	ENST00000404484	C2orf49	Q9BVC5	232 aa	Predicted RBP	21.3	■■□□□ 1
TPM1-208	ENST00000404484	IL22	Q9GZX6	179 aa		21.3	■■□□□ 1
TPM1-208	ENST00000404484	UBP1	Q9NZI7	540 aa		21.3	■■□□□ 1
TPM1-208	ENST00000404484	KIAA1522	Q9P206	1035 aa	Predicted RBP	21.3	■■□□□ 1
TPM1-208	ENST00000404484	MAGEB16	A2A368	324 aa		21.29	■■□□□ 1
TPM1-208	ENST00000404484	POLR3G	O15318	223 aa	Predicted RBP	21.29	■■□□□ 1
TPM1-208	ENST00000404484	GPR37L1	O60883	481 aa		21.29	■■□□□ 1
TPM1-208	ENST00000404484	SLC14A2	Q15849	920 aa		21.29	■■□□□ 1
TPM1-208	ENST00000404484	ALG1L	Q6GMV1	187 aa		21.29	■■□□□ 1
TPM1-208	ENST00000404484	TPGS1	Q6ZTW0	290 aa		21.29	■■□□□ 1
TPM1-208	ENST00000404484	GSDMB	Q8TAX9	411 aa		21.29	■■□□□ 1
TPM1-208	ENST00000404484	FBF1	Q8TES7	1133 aa		21.29	■■□□□ 1
TPM1-208	ENST00000404484	NXPE3	Q969Y0	559 aa		21.29	■■□□□ 1
TPM1-208	ENST00000404484	MGME1	Q9BQP7	344 aa		21.29	■■□□□ 1
TPM1-208	ENST00000404484	LGALS13	Q9UHV8	139 aa		21.29	■■□□□ 1
TPM1-208	ENST00000404484	RABGEF1	Q9UJ41	708 aa		21.29	■■□□□ 1
TPM1-208	ENST00000404484	NUMBL	Q9Y6R0	609 aa		21.29	■■□□□ 1
TPM1-208	ENST00000404484	MT-CYB	P00156	380 aa	Predicted RBP	21.28	■■□□□ 1
TPM1-208	ENST00000404484	SLCO1A2	P46721	670 aa		21.28	■■□□□ 1
TPM1-208	ENST00000404484	FSCB	Q5H9T9	825 aa		21.28	■■□□□ 1
TPM1-208	ENST00000404484	STEAP4	Q687X5	459 aa		21.28	■■□□□ 1
TPM1-208	ENST00000404484	TRIM67	Q6ZTA4	783 aa		21.28	■■□□□ 1
TPM1-208	ENST00000404484	CYS1	Q717R9	158 aa		21.28	■■□□□ 1
TPM1-208	ENST00000404484	UBALD2	Q8IYN6	164 aa		21.28	■■□□□ 1
TPM1-208	ENST00000404484	XPO6	Q96QU8	1125 aa	Known RBP	21.28	■■□□□ 1
TPM1-208	ENST00000404484	FICD	Q9BVA6	458 aa		21.28	■■□□□ 1
TPM1-208	ENST00000404484	OR51B4	Q9Y5P0	310 aa		21.28	■■□□□ 1
TPM1-208	ENST00000404484	NUP210	Q8TEM1	1887 aa	Predicted RBP	21.28	■■□□□ 1
TPM1-208	ENST00000404484	CXorf51A	A0A1B0GTR3	108 aa		21.27	■■□□□ 1
TPM1-208	ENST00000404484	TCRBV9S1A1T	A0A576	114 aa		21.27	■■□□□ 1
TPM1-208	ENST00000404484	USP12	O75317	370 aa		21.27	■■□□□ 1
TPM1-208	ENST00000404484	PMPCB	O75439	489 aa		21.27	■■□□□ 1
TPM1-208	ENST00000404484	ADRA1A	P35348	466 aa		21.27	■■□□□ 1
TPM1-208	ENST00000404484	CSK	P41240	450 aa		21.27	■■□□□ 1
TPM1-208	ENST00000404484	WNT3A	P56704	352 aa		21.27	■■□□□ 1
TPM1-208	ENST00000404484	INO80D	Q53TQ3	878 aa	Predicted RBP	21.27	■■□□□ 1
TPM1-208	ENST00000404484	FYB2	Q5VWT5	728 aa		21.27	■■□□□ 1
TPM1-208	ENST00000404484	KCTD16	Q68DU8	428 aa		21.27	■■□□□ 1
TPM1-208	ENST00000404484	RETSAT	Q6NUM9	610 aa		21.27	■■□□□ 1

Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms