RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 LAMA4Q16363 1823 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 SLC15A5A6NIM6 579 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.41□□□□□ -0.9
COL28A1-201ENST00000399429 NPR1P16066 1061 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 NCK1P16333 377 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 SQLEQ14534 574 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 PCSK7Q16549 785 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 ATP6AP1LQ52LC2 224 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 WDR45BQ5MNZ6 344 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 DENND5AQ6IQ26 1287 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 DNAJC14Q6Y2X3 702 aaPredicted RBP9.41□□□□□ -0.9
COL28A1-201ENST00000399429 ZC3H3Q8IXZ2 948 aaKnown RBP9.41□□□□□ -0.9
COL28A1-201ENST00000399429 HDAC10Q969S8 669 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 MRPL4Q9BYD3 311 aaKnown RBP9.41□□□□□ -0.9
COL28A1-201ENST00000399429 NAA50Q9GZZ1 169 aaKnown RBP9.41□□□□□ -0.9
COL28A1-201ENST00000399429 SIK2Q9H0K1 926 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.41□□□□□ -0.9
COL28A1-201ENST00000399429 TEX264Q9Y6I9 313 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 ASNSP08243 561 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 CLK3P49761 638 aaKnown RBP9.41□□□□□ -0.9
COL28A1-201ENST00000399429 AP3M2P53677 418 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 MRPS5P82675 430 aaKnown RBP9.41□□□□□ -0.9
COL28A1-201ENST00000399429 SF3B4Q15427 424 aaKnown RBP eCLIP9.41□□□□□ -0.9
COL28A1-201ENST00000399429 COLEC12Q5KU26 742 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 MAP4K3Q8IVH8 894 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 SLC15A3Q8IY34 581 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 ATG16L2Q8NAA4 619 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 RNF149Q8NC42 400 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 NODALQ96S42 347 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 ZNF347Q96SE7 839 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 TOR4AQ9NXH8 423 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 NR2E3Q9Y5X4 410 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 DFFAO00273 331 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 SYNCRIPO60506 623 aaKnown RBP9.4□□□□□ -0.9
COL28A1-201ENST00000399429 CYP7B1O75881 506 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 FARP2O94887 1054 aaPredicted RBP9.4□□□□□ -0.9
COL28A1-201ENST00000399429 FADS2O95864 444 aaKnown RBP9.4□□□□□ -0.9
COL28A1-201ENST00000399429 TRUB2O95900 331 aaKnown RBP9.4□□□□□ -0.9
COL28A1-201ENST00000399429 PSMB4P28070 264 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 HOXD11P31277 338 aaPredicted RBP9.4□□□□□ -0.9
COL28A1-201ENST00000399429 MADCAM1Q13477 382 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 POU6F1Q14863 301 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 NOMO1Q15155 1222 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 VPS26BQ4G0F5 336 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 CDC42EP5Q6NZY7 148 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 SAMD3Q8N6K7 520 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 OR9Q1Q8NGQ5 310 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 LMO3Q8TAP4 145 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 TBCDQ9BTW9 1192 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 CENPOQ9BU64 300 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 RPF2Q9H7B2 306 aaKnown RBP9.4□□□□□ -0.9
COL28A1-201ENST00000399429 PNPLA8Q9NP80 782 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 INIPQ9NRY2 104 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 PTBP2Q9UKA9 531 aaKnown RBP9.4□□□□□ -0.9
COL28A1-201ENST00000399429 SYNPO2Q9UMS6 1093 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 BHMG1C9JSJ3 638 aaPredicted RBP9.4□□□□□ -0.9
COL28A1-201ENST00000399429 MAFGO15525 162 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 NDUFS2O75306 463 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 KRT6AP02538 564 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 KRT6BP04259 564 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 FGF3P11487 239 aaPredicted RBP9.4□□□□□ -0.9
COL28A1-201ENST00000399429 CYP4B1P13584 511 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 NAT1P18440 290 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 PRKCEQ02156 737 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 REP15Q6BDI9 236 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 PRMT9Q6P2P2 845 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 PIWIL3Q7Z3Z3 882 aaKnown RBP9.4□□□□□ -0.9
COL28A1-201ENST00000399429 FAM160B2Q86V87 743 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 LRRC49Q8IUZ0 686 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 SLC41A1Q8IVJ1 513 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 PPHLN1Q8NEY8 458 aaKnown RBP9.4□□□□□ -0.9
COL28A1-201ENST00000399429 OR5B17Q8NGF7 314 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 TSPAN18Q96SJ8 248 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 LGMNQ99538 433 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 PPME1Q9Y570 386 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 TMEM94Q12767 1356 aa9.4□□□□□ -0.9
COL28A1-201ENST00000399429 PMPCBO75439 489 aa9.4□□□□□ -0.91
COL28A1-201ENST00000399429 WBP4O75554 376 aaKnown RBP9.4□□□□□ -0.91
COL28A1-201ENST00000399429 GNAO1P09471 354 aa9.4□□□□□ -0.91
COL28A1-201ENST00000399429 MAPTP10636 758 aaKnown RBP9.4□□□□□ -0.91
COL28A1-201ENST00000399429 CPOXP36551 454 aa9.4□□□□□ -0.91
COL28A1-201ENST00000399429 OPRL1P41146 370 aa9.4□□□□□ -0.91
COL28A1-201ENST00000399429 SULT1E1P49888 294 aa9.4□□□□□ -0.91
COL28A1-201ENST00000399429 TPI1P60174 286 aa9.4□□□□□ -0.91
COL28A1-201ENST00000399429 CYP4F2P78329 520 aa9.4□□□□□ -0.91
COL28A1-201ENST00000399429 CYP4F3Q08477 520 aa9.4□□□□□ -0.91
COL28A1-201ENST00000399429 EMC2Q15006 297 aa9.4□□□□□ -0.91
COL28A1-201ENST00000399429 ZACNQ401N2 412 aa9.4□□□□□ -0.91
COL28A1-201ENST00000399429 KLHL17Q6TDP4 642 aa9.4□□□□□ -0.91
COL28A1-201ENST00000399429 CYP4V2Q6ZWL3 525 aaPredicted RBP9.4□□□□□ -0.91
COL28A1-201ENST00000399429 NECAB2Q7Z6G3 386 aa9.4□□□□□ -0.91
COL28A1-201ENST00000399429 P2RY8Q86VZ1 359 aa9.4□□□□□ -0.91
COL28A1-201ENST00000399429 C12orf56Q8IXR9 622 aa9.4□□□□□ -0.91
COL28A1-201ENST00000399429 EID3Q8N140 333 aa9.4□□□□□ -0.91
COL28A1-201ENST00000399429 SVOPQ8N4V2 548 aa9.4□□□□□ -0.91
COL28A1-201ENST00000399429 TMEM161BQ8NDZ6 487 aa9.4□□□□□ -0.91
COL28A1-201ENST00000399429 CGRRF1Q99675 332 aa9.4□□□□□ -0.91
COL28A1-201ENST00000399429 HGH1Q9BTY7 390 aa9.4□□□□□ -0.91
COL28A1-201ENST00000399429 C20orf27Q9GZN8 174 aa9.4□□□□□ -0.91
COL28A1-201ENST00000399429 TP63Q9H3D4 680 aaPredicted RBP9.4□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms