RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 EIF3HO15372 352 aaKnown RBP eCLIP7.26□□□□□ -1.251e-6■□□□□ 9.7
UPF2-203ENST00000397053 TLR5O60602 858 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 CCNB2O95067 398 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 MFN2O95140 757 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 HMGCRP04035 888 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 SPATA31D3P0C874 917 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 FDPSP14324 419 aaKnown RBP7.26□□□□□ -1.25
UPF2-203ENST00000397053 GLUD2P49448 558 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 TTPAP49638 278 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 GDI2P50395 445 aaKnown RBP7.26□□□□□ -1.25
UPF2-203ENST00000397053 ERVK-21P61565 698 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 SULT2A1Q06520 285 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 MSLNQ13421 630 aaPredicted RBP7.26□□□□□ -1.25
UPF2-203ENST00000397053 PPIGQ13427 754 aaKnown RBP eCLIP7.26□□□□□ -1.251e-6■■■■□ 24.4
UPF2-203ENST00000397053 PFKFB4Q16877 469 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 TIMM50Q3ZCQ8 353 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 ZCWPW2Q504Y3 356 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 SPANXN3Q5MJ09 141 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 RTL4Q6ZR62 310 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 SPATA31D4Q6ZUB0 917 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 C3orf67Q6ZVT6 689 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 HPS6Q86YV9 775 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 MAB21L3Q8N8X9 362 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 ZNF483Q8TF39 744 aaPredicted RBP7.26□□□□□ -1.25
UPF2-203ENST00000397053 GPER1Q99527 375 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 SEMA3CQ99985 751 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 C3orf14Q9HBI5 128 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 INTS10Q9NVR2 710 aaKnown RBP7.26□□□□□ -1.25
UPF2-203ENST00000397053 CCDC167Q9P0B6 97 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 WHRNQ9P202 907 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 HBS1LQ9Y450 684 aaKnown RBP7.26□□□□□ -1.25
UPF2-203ENST00000397053 A0A087X0B3 334 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 CLDN4O14493 209 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 TRDMT1O14717 391 aaKnown RBP7.26□□□□□ -1.25
UPF2-203ENST00000397053 IRF6O14896 467 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 ATP9AO75110 1047 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 MATN4O95460 622 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 NQO1P15559 274 aaKnown RBP7.26□□□□□ -1.25
UPF2-203ENST00000397053 BGNP21810 368 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 CD86P42081 329 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 TAS2R50P59544 299 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 DSG1Q02413 1049 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 OC90Q02509 493 aaPredicted RBP7.26□□□□□ -1.25
UPF2-203ENST00000397053 TAB1Q15750 504 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 PTPRNQ16849 979 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 XKR6Q5GH73 641 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 PPP1R15BQ5SWA1 713 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 RASSF6Q6ZTQ3 369 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 DEFB107AQ8IZN7 70 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 HDDC3Q8N4P3 179 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 JSRP1Q96MG2 331 aaPredicted RBP7.26□□□□□ -1.25
UPF2-203ENST00000397053 TRNT1Q96Q11 434 aaKnown RBP7.26□□□□□ -1.25
UPF2-203ENST00000397053 ZYG11BQ9C0D3 744 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 BATF3Q9NR55 127 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 MARK1Q9P0L2 795 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 PTGFRNQ9P2B2 879 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 PHF11Q9UIL8 331 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 MAP3K4Q9Y6R4 1608 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 HACD1B0YJ81 288 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 E5RJQ4 531 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 NEDD8-MDP1E9PL57 170 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 SERPINB7O75635 380 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 AKAP3O75969 853 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 FGF19O95750 216 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 GYPCP04921 128 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 CCNYL3P0C7X3 344 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 PAX3P23760 479 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 OMPP47874 163 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 NEK3P51956 506 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 ANTXR2P58335 489 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 DMTNQ08495 405 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 RASA2Q15283 850 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 ATP13A5Q4VNC0 1218 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 GALNT7Q86SF2 657 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 UNC93AQ86WB7 457 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 C17orf64Q86WR6 236 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 KIAA0319LQ8IZA0 1049 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 ATP6V1C2Q8NEY4 427 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 FAM81AQ8TBF8 368 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 ARNTL2Q8WYA1 636 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 RAD51AP1Q96B01 352 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 EXOC2Q96KP1 924 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 VPS35Q96QK1 796 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 SLC25A23Q9BV35 468 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 SLC39A8Q9C0K1 460 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 POLMQ9NP87 494 aaPredicted RBP7.26□□□□□ -1.25
UPF2-203ENST00000397053 FANCFQ9NPI8 374 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 PRDM8Q9NQV8 689 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 TAGLN3Q9UI15 199 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 USP20Q9Y2K6 914 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 HES2Q9Y543 173 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 MAPKBP1O60336 1514 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 SPATA31E1Q6ZUB1 1445 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 EFCAB10A6NFE3 127 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 E7ENQ6 273 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 DNALI1O14645 258 aaPredicted RBP7.26□□□□□ -1.25
UPF2-203ENST00000397053 FFAR3O14843 346 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 GPR42O15529 346 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 FSBPO95073 299 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 LDOC1O95751 146 aaPredicted RBP7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms