RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 FAM129BQ96TA1 746 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 CCNB1IP1Q9NPC3 277 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 A0A0B4J269 797 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 CCL15-CCL14A0A0B4J2E2 113 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 FAM86B2P0C5J1 330 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 ERVK-9P63128 1117 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 CBFBQ13951 182 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 CCL15Q16663 113 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 SV2AQ7L0J3 742 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 SCUBE3Q8IX30 993 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 SLC47A1Q96FL8 570 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 DHRS12A0PJE2 317 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 KATNAL2Q8IYT4 538 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 ZFP28Q8NHY6 868 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 CD101Q93033 1021 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 ALKQ9UM73 1620 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 LSM1O15116 133 aaKnown RBP14.11□□□□□ -0.15
COL4A3-202ENST00000396578 DHFRP00374 187 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 AMPD1P23109 780 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 UGT1A5P35504 534 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 RPL4P36578 427 aaKnown RBP14.11□□□□□ -0.15
COL4A3-202ENST00000396578 GRIA4P48058 902 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 SREBF2Q12772 1141 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 ARCQ7LC44 396 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 ZC3H13Q5T200 1668 aaKnown RBP14.11□□□□□ -0.15
COL4A3-202ENST00000396578 FAM237BA0A1B0GVD1 139 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 OR5F1O95221 314 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 CBX5P45973 191 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 SLC25A3Q00325 362 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 SWI5Q1ZZU3 235 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 PAGE2Q7Z2X7 111 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 RP9Q8TA86 221 aaKnown RBP14.11□□□□□ -0.15
COL4A3-202ENST00000396578 AGO4Q9HCK5 861 aaKnown RBP14.11□□□□□ -0.15
COL4A3-202ENST00000396578 PCDHGC5Q9Y5F6 944 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 MYH11P35749 1972 aa14.11□□□□□ -0.15
COL4A3-202ENST00000396578 CCDC166P0CW27 439 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 CXCL8P10145 99 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 UBAP2LQ14157 1087 aaKnown RBP14.1□□□□□ -0.15
COL4A3-202ENST00000396578 COL26A1Q96A83 441 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 CITED4Q96RK1 184 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 ETNK2Q9NVF9 386 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 NUMA1Q14980 2115 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 ABCA6Q8N139 1617 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 TRIM38O00635 465 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 NTRK1P04629 796 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 NFKB1P19838 968 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 TCEA2Q15560 299 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 TYSND1Q2T9J0 566 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 SPATA20Q8TB22 786 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 POLR1EQ9GZS1 481 aaKnown RBP14.1□□□□□ -0.15
COL4A3-202ENST00000396578 THG1LQ9NWX6 298 aaKnown RBP14.1□□□□□ -0.15
COL4A3-202ENST00000396578 ATXN10Q9UBB4 475 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 ADAM28Q9UKQ2 775 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 ST3GAL5Q9UNP4 418 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 SAMHD1Q9Y3Z3 626 aaKnown RBP14.1□□□□□ -0.15
COL4A3-202ENST00000396578 ACTL7BQ9Y614 415 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 TEX46H3BTG2 121 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 MDM4O15151 490 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 HMGCRP04035 888 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 YBX3P16989 372 aaKnown RBP eCLIP14.1□□□□□ -0.15
COL4A3-202ENST00000396578 ERCC2P18074 760 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 IL18R1Q13478 541 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 SLC5A9Q2M3M2 681 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 SPESP1Q6UW49 350 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 FAM131AQ6UXB0 335 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP14.1□□□□□ -0.15
COL4A3-202ENST00000396578 ATP13A1Q9HD20 1204 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 RASSF1Q9NS23 344 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 SAE1Q9UBE0 346 aaPredicted RBP14.1□□□□□ -0.15
COL4A3-202ENST00000396578 SPATA31A3Q5VYP0 1347 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 CRB1P82279 1406 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 AGRPO00253 132 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 LRIG2O94898 1065 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 ZBTB7AO95365 584 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 PRKAG1P54619 331 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 ARMC12Q5T9G4 340 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 TRPV1Q8NER1 839 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 ATG4CQ96DT6 458 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 CXCR2P25025 360 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 C16orf46Q6P387 395 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 ERICH5Q6P6B1 374 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 HDAC7Q8WUI4 952 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 SPACA7Q96KW9 195 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 B3GALT6Q96L58 329 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 RBM7Q9Y580 266 aaKnown RBP14.1□□□□□ -0.15
COL4A3-202ENST00000396578 TULP4Q9NRJ4 1543 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 PRODHO43272 600 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 SNX3O60493 162 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 PSME3P61289 254 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 IQCF2Q8IXL9 164 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 COLGALT2Q8IYK4 626 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 TATDN2Q93075 761 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 DNAJC18Q9H819 358 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 PCDHGA3Q9Y5H0 932 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 SAGE2PA6NJ88 616 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 PARP6Q2NL67 630 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 FOXR1Q6PIV2 292 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 PTCHD4Q6ZW05 846 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 PIH1D2Q8WWB5 315 aa14.1□□□□□ -0.15
COL4A3-202ENST00000396578 PPP3R2Q96LZ3 170 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms