RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 GOLGA6DP0CG33 693 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 POLR2EP19388 210 aaKnown RBP20.18■□□□□ 0.82
CLN3-205ENST00000359984 CR2P20023 1033 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 HSPA9P38646 679 aaKnown RBP20.18■□□□□ 0.82
CLN3-205ENST00000359984 KDELC1Q6UW63 502 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 RNF135Q8IUD6 432 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 PLCD3Q8N3E9 789 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 FRMD8Q9BZ67 464 aaPredicted RBP20.18■□□□□ 0.82
CLN3-205ENST00000359984 LRRC40Q9H9A6 602 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 KCNK12Q9HB15 430 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 GOLGA6AQ9NYA3 693 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 UNC80Q8N2C7 3258 aa20.18■□□□□ 0.82
CLN3-205ENST00000359984 COL4A3Q01955 1670 aa20.17■□□□□ 0.82
CLN3-205ENST00000359984 USP12O75317 370 aa20.17■□□□□ 0.82
CLN3-205ENST00000359984 PMPCBO75439 489 aa20.17■□□□□ 0.82
CLN3-205ENST00000359984 SRCP12931 536 aa20.17■□□□□ 0.82
CLN3-205ENST00000359984 RHOAP61586 193 aa20.17■□□□□ 0.82
CLN3-205ENST00000359984 SARNPP82979 210 aaKnown RBP20.17■□□□□ 0.82
CLN3-205ENST00000359984 SKOR1P84550 965 aa20.17■□□□□ 0.82
CLN3-205ENST00000359984 SLMAPQ14BN4 828 aa20.17■□□□□ 0.82
CLN3-205ENST00000359984 PTCRAQ6ISU1 281 aaPredicted RBP20.17■□□□□ 0.82
CLN3-205ENST00000359984 PDIK1LQ8N165 341 aa20.17■□□□□ 0.82
CLN3-205ENST00000359984 PHTF2Q8N3S3 785 aa20.17■□□□□ 0.82
CLN3-205ENST00000359984 SORCS1Q8WY21 1168 aa20.17■□□□□ 0.82
CLN3-205ENST00000359984 NSMCE3Q96MG7 304 aa20.17■□□□□ 0.82
CLN3-205ENST00000359984 NOD2Q9HC29 1040 aa20.17■□□□□ 0.82
CLN3-205ENST00000359984 SLC25A13Q9UJS0 675 aa20.17■□□□□ 0.82
CLN3-205ENST00000359984 BANF1O75531 89 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 SASH3O75995 380 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 SCNN1BP51168 640 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 WNT3AP56704 352 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 KDSRQ06136 332 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 NSUN2Q08J23 767 aaKnown RBP eCLIP20.16■□□□□ 0.82
CLN3-205ENST00000359984 MPP3Q13368 585 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 LRRC8BQ6P9F7 803 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 CENPUQ71F23 418 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 METTL3Q86U44 580 aaKnown RBP20.16■□□□□ 0.82
CLN3-205ENST00000359984 SH2D3CQ8N5H7 860 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 IPMKQ8NFU5 416 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 NXPE3Q969Y0 559 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 MRGPRX2Q96LB1 330 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 XAB2Q9HCS7 855 aaKnown RBP20.16■□□□□ 0.82
CLN3-205ENST00000359984 SAYSD1Q9NPB0 183 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 VPS45Q9NRW7 570 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 SLCO3A1Q9UIG8 710 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 ERVW-1Q9UQF0 538 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 E7ESA3 106 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 ZNF821O75541 412 aaPredicted RBP20.16■□□□□ 0.82
CLN3-205ENST00000359984 ADRA1AP35348 466 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 MAGEA3P43357 314 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 PDIA2Q13087 525 aaKnown RBP20.16■□□□□ 0.82
CLN3-205ENST00000359984 CBLBQ13191 982 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 BBS9Q3SYG4 887 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 DGKKQ5KSL6 1271 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 ATXN7L2Q5T6C5 722 aaPredicted RBP20.16■□□□□ 0.82
CLN3-205ENST00000359984 CEP128Q6ZU80 1094 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 SLC44A3Q8N4M1 653 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 MREGQ8N565 214 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 OR52K1Q8NGK4 314 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 CYB5D2Q8WUJ1 264 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 NUDCD1Q96RS6 583 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 APOL2Q9BQE5 337 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 FICDQ9BVA6 458 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 FUT8Q9BYC5 575 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 CIPCQ9C0C6 399 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 PHACTR1Q9C0D0 580 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 SCUBE2Q9NQ36 999 aa20.16■□□□□ 0.82
CLN3-205ENST00000359984 PRRT4C9JH25 899 aa20.15■□□□□ 0.82
CLN3-205ENST00000359984 ALOX15BO15296 676 aa20.15■□□□□ 0.82
CLN3-205ENST00000359984 EIF3HO15372 352 aaKnown RBP eCLIP20.15■□□□□ 0.82
CLN3-205ENST00000359984 AGTP01019 485 aa20.15■□□□□ 0.82
CLN3-205ENST00000359984 MLNP12872 115 aa20.15■□□□□ 0.82
CLN3-205ENST00000359984 EIF2DP41214 584 aaKnown RBP20.15■□□□□ 0.82
CLN3-205ENST00000359984 PMS2P54278 862 aa20.15■□□□□ 0.82
CLN3-205ENST00000359984 FASTKD3Q14CZ7 662 aaKnown RBP20.15■□□□□ 0.82
CLN3-205ENST00000359984 PCSK7Q16549 785 aa20.15■□□□□ 0.82
CLN3-205ENST00000359984 HP1BP3Q5SSJ5 553 aaPredicted RBP20.15■□□□□ 0.82
CLN3-205ENST00000359984 RELL1Q8IUW5 271 aa20.15■□□□□ 0.82
CLN3-205ENST00000359984 AGGF1Q8N302 714 aaeCLIP20.15■□□□□ 0.82
CLN3-205ENST00000359984 CSGALNACT1Q8TDX6 532 aa20.15■□□□□ 0.82
CLN3-205ENST00000359984 MRGPRX3Q96LB0 322 aa20.15■□□□□ 0.82
CLN3-205ENST00000359984 TBL1YQ9BQ87 522 aa20.15■□□□□ 0.82
CLN3-205ENST00000359984 TM6SF2Q9BZW4 377 aa20.15■□□□□ 0.82
CLN3-205ENST00000359984 SEMA4AQ9H3S1 761 aa20.15■□□□□ 0.82
CLN3-205ENST00000359984 CASS4Q9NQ75 786 aa20.15■□□□□ 0.82
CLN3-205ENST00000359984 PIH1D1Q9NWS0 290 aaKnown RBP20.15■□□□□ 0.82
CLN3-205ENST00000359984 ELOVL2Q9NXB9 296 aa20.15■□□□□ 0.82
CLN3-205ENST00000359984 INSIG1O15503 277 aa20.14■□□□□ 0.81
CLN3-205ENST00000359984 ATP5BP06576 529 aaKnown RBP20.14■□□□□ 0.81
CLN3-205ENST00000359984 SERPINF2P08697 491 aa20.14■□□□□ 0.81
CLN3-205ENST00000359984 DLDP09622 509 aaKnown RBP20.14■□□□□ 0.81
CLN3-205ENST00000359984 CES1P23141 567 aa20.14■□□□□ 0.81
CLN3-205ENST00000359984 MAGEA4P43358 317 aa20.14■□□□□ 0.81
CLN3-205ENST00000359984 SOX9P48436 509 aa20.14■□□□□ 0.81
CLN3-205ENST00000359984 CBX1P83916 185 aa20.14■□□□□ 0.81
CLN3-205ENST00000359984 TFF2Q03403 129 aa20.14■□□□□ 0.81
CLN3-205ENST00000359984 NAPEPLDQ6IQ20 393 aa20.14■□□□□ 0.81
CLN3-205ENST00000359984 KDELC2Q7Z4H8 507 aa20.14■□□□□ 0.81
CLN3-205ENST00000359984 SFTPA1Q8IWL2 248 aa20.14■□□□□ 0.81
CLN3-205ENST00000359984 TERB1Q8NA31 727 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms