RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 BAIAP3O94812 1187 aa16.08■□□□□ 0.16
HMGA1-202ENST00000347617 VAPBO95292 243 aa16.08■□□□□ 0.16
HMGA1-202ENST00000347617 ASGR1P07306 291 aa16.08■□□□□ 0.16
HMGA1-202ENST00000347617 C7P10643 843 aa16.08■□□□□ 0.16
HMGA1-202ENST00000347617 VARSP26640 1264 aaKnown RBP16.08■□□□□ 0.16
HMGA1-202ENST00000347617 SDC4P31431 198 aa16.08■□□□□ 0.16
HMGA1-202ENST00000347617 PLOD1Q02809 727 aaPredicted RBP16.08■□□□□ 0.16
HMGA1-202ENST00000347617 STX5Q13190 355 aa16.08■□□□□ 0.16
HMGA1-202ENST00000347617 PTK2BQ14289 1009 aa16.08■□□□□ 0.16
HMGA1-202ENST00000347617 KCNA10Q16322 511 aa16.08■□□□□ 0.16
HMGA1-202ENST00000347617 DPYSL2Q16555 572 aa16.08■□□□□ 0.16
HMGA1-202ENST00000347617 LIPMQ5VYY2 423 aa16.08■□□□□ 0.16
HMGA1-202ENST00000347617 ZYG11AQ6WRX3 759 aa16.08■□□□□ 0.16
HMGA1-202ENST00000347617 GPR180Q86V85 440 aa16.08■□□□□ 0.16
HMGA1-202ENST00000347617 ZNF354CQ86Y25 554 aa16.08■□□□□ 0.16
HMGA1-202ENST00000347617 ANKFN1Q8N957 763 aa16.08■□□□□ 0.16
HMGA1-202ENST00000347617 MAPK15Q8TD08 544 aa16.08■□□□□ 0.16
HMGA1-202ENST00000347617 GIPC3Q8TF64 312 aa16.08■□□□□ 0.16
HMGA1-202ENST00000347617 CNDP2Q96KP4 475 aaKnown RBP16.08■□□□□ 0.16
HMGA1-202ENST00000347617 TSNARE1Q96NA8 513 aa16.08■□□□□ 0.16
HMGA1-202ENST00000347617 DNAI2Q9GZS0 605 aa16.08■□□□□ 0.16
HMGA1-202ENST00000347617 COQ10BQ9H8M1 238 aa16.08■□□□□ 0.16
HMGA1-202ENST00000347617 TRPC5OSA6NMA1 111 aa16.07■□□□□ 0.16
HMGA1-202ENST00000347617 RECQL4O94761 1208 aa16.07■□□□□ 0.16
HMGA1-202ENST00000347617 CCND3P30281 292 aaPredicted RBP16.07■□□□□ 0.16
HMGA1-202ENST00000347617 MLH1P40692 756 aa16.07■□□□□ 0.16
HMGA1-202ENST00000347617 PNPLA4P41247 253 aa16.07■□□□□ 0.16
HMGA1-202ENST00000347617 MGAT3Q09327 533 aa16.07■□□□□ 0.16
HMGA1-202ENST00000347617 TRIM32Q13049 653 aa16.07■□□□□ 0.16
HMGA1-202ENST00000347617 C16orf72Q14CZ0 275 aa16.07■□□□□ 0.16
HMGA1-202ENST00000347617 GRAMD4Q6IC98 578 aa16.07■□□□□ 0.16
HMGA1-202ENST00000347617 PPP4R4Q6NUP7 873 aa16.07■□□□□ 0.16
HMGA1-202ENST00000347617 RNF180Q86T96 592 aa16.07■□□□□ 0.16
HMGA1-202ENST00000347617 ZDHHC17Q8IUH5 632 aa16.07■□□□□ 0.16
HMGA1-202ENST00000347617 DCLK2Q8N568 766 aa16.07■□□□□ 0.16
HMGA1-202ENST00000347617 HTR3CQ8WXA8 447 aa16.07■□□□□ 0.16
HMGA1-202ENST00000347617 ZMAT2Q96NC0 199 aaKnown RBP16.07■□□□□ 0.16
HMGA1-202ENST00000347617 KLHL32Q96NJ5 620 aa16.07■□□□□ 0.16
HMGA1-202ENST00000347617 TSEN34Q9BSV6 310 aaKnown RBP16.07■□□□□ 0.16
HMGA1-202ENST00000347617 GATA5Q9BWX5 397 aaPredicted RBP16.07■□□□□ 0.16
HMGA1-202ENST00000347617 UNC93B1Q9H1C4 597 aa16.07■□□□□ 0.16
HMGA1-202ENST00000347617 CAAP1Q9H8G2 361 aa16.07■□□□□ 0.16
HMGA1-202ENST00000347617 NMRAL1Q9HBL8 299 aa16.07■□□□□ 0.16
HMGA1-202ENST00000347617 MAN1C1Q9NR34 630 aa16.07■□□□□ 0.16
HMGA1-202ENST00000347617 OLAHQ9NV23 265 aa16.07■□□□□ 0.16
HMGA1-202ENST00000347617 ARHGEF38Q9NXL2 777 aa16.07■□□□□ 0.16
HMGA1-202ENST00000347617 NSMCE4AQ9NXX6 385 aa16.07■□□□□ 0.16
HMGA1-202ENST00000347617 TMEM9Q9P0T7 183 aa16.07■□□□□ 0.16
HMGA1-202ENST00000347617 RCOR3Q9P2K3 495 aaPredicted RBP16.07■□□□□ 0.16
HMGA1-202ENST00000347617 SARDHQ9UL12 918 aa16.07■□□□□ 0.16
HMGA1-202ENST00000347617 CCDC162PA2VCL2 907 aa16.06■□□□□ 0.16
HMGA1-202ENST00000347617 C7orf72A4D263 438 aa16.06■□□□□ 0.16
HMGA1-202ENST00000347617 TRIM64A6NGJ6 449 aa16.06■□□□□ 0.16
HMGA1-202ENST00000347617 PIRO00625 290 aa16.06■□□□□ 0.16
HMGA1-202ENST00000347617 GPR182O15218 404 aa16.06■□□□□ 0.16
HMGA1-202ENST00000347617 CFLARO15519 480 aa16.06■□□□□ 0.16
HMGA1-202ENST00000347617 PAPSS1O43252 624 aaPredicted RBP16.06■□□□□ 0.16
HMGA1-202ENST00000347617 SUPT3HO75486 399 aa16.06■□□□□ 0.16
HMGA1-202ENST00000347617 EPHA3P29320 983 aa16.06■□□□□ 0.16
HMGA1-202ENST00000347617 CAP1Q01518 475 aa16.06■□□□□ 0.16
HMGA1-202ENST00000347617 C1QTNF12Q5T7M4 302 aa16.06■□□□□ 0.16
HMGA1-202ENST00000347617 SCYL2Q6P3W7 929 aa16.06■□□□□ 0.16
HMGA1-202ENST00000347617 KCNT2Q6UVM3 1135 aa16.06■□□□□ 0.16
HMGA1-202ENST00000347617 LCLAT1Q6UWP7 414 aa16.06■□□□□ 0.16
HMGA1-202ENST00000347617 FAM183BPQ6ZVS7 135 aa16.06■□□□□ 0.16
HMGA1-202ENST00000347617 UNC93AQ86WB7 457 aa16.06■□□□□ 0.16
HMGA1-202ENST00000347617 FIBCD1Q8N539 461 aa16.06■□□□□ 0.16
HMGA1-202ENST00000347617 MFSD2AQ8NA29 543 aa16.06■□□□□ 0.16
HMGA1-202ENST00000347617 GOLM1Q8NBJ4 401 aa16.06■□□□□ 0.16
HMGA1-202ENST00000347617 DDHD1Q8NEL9 900 aa16.06■□□□□ 0.16
HMGA1-202ENST00000347617 ARNTL2Q8WYA1 636 aa16.06■□□□□ 0.16
HMGA1-202ENST00000347617 ISOC1Q96CN7 298 aa16.06■□□□□ 0.16
HMGA1-202ENST00000347617 DOK1Q99704 481 aa16.06■□□□□ 0.16
HMGA1-202ENST00000347617 NXF3Q9H4D5 531 aaKnown RBP16.06■□□□□ 0.16
HMGA1-202ENST00000347617 LRRC40Q9H9A6 602 aa16.06■□□□□ 0.16
HMGA1-202ENST00000347617 GNPTGQ9UJJ9 305 aa16.06■□□□□ 0.16
HMGA1-202ENST00000347617 ZNF711Q9Y462 761 aa16.06■□□□□ 0.16
HMGA1-202ENST00000347617 SMIM28A0A1B0GU29 152 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 TCRBV3S1A0A5B6 114 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 MOXD2PA6NHM9 499 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 DGKIO75912 1065 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 MGAT1P26572 445 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 PTPN9P43378 593 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 PKNOX1P55347 436 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 PSME3P61289 254 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 PDK1Q15118 436 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 C15orf59Q2T9L4 293 aaPredicted RBP16.05■□□□□ 0.16
HMGA1-202ENST00000347617 CCDC92Q53HC0 331 aaPredicted RBP16.05■□□□□ 0.16
HMGA1-202ENST00000347617 FAM26DQ5JW98 314 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 IL23RQ5VWK5 629 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 C9orf57Q5W0N0 161 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 NAPRTQ6XQN6 538 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 HACD2Q6Y1H2 254 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 FAR2Q96K12 515 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 YTHDF1Q9BYJ9 559 aaKnown RBP16.05■□□□□ 0.16
HMGA1-202ENST00000347617 ELOVL4Q9GZR5 314 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 TRPV6Q9H1D0 765 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 MRM3Q9HC36 420 aaKnown RBP16.05■□□□□ 0.16
HMGA1-202ENST00000347617 GDAP2Q9NXN4 497 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 IPPQ9Y573 584 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms