RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 SLC35E2BP0CK96 405 aa22.65■■□□□ 1.22
TRIM28-202ENST00000341753 SETSIPP0DME0 302 aa22.65■■□□□ 1.22
TRIM28-202ENST00000341753 SULT2A1Q06520 285 aa22.65■■□□□ 1.22
TRIM28-202ENST00000341753 PPP1R3AQ16821 1122 aa22.65■■□□□ 1.22
TRIM28-202ENST00000341753 ANKDD1AQ495B1 522 aa22.65■■□□□ 1.22
TRIM28-202ENST00000341753 CLVS1Q8IUQ0 354 aaPredicted RBP22.65■■□□□ 1.22
TRIM28-202ENST00000341753 KDM1BQ8NB78 822 aa22.65■■□□□ 1.22
TRIM28-202ENST00000341753 LZICQ8WZA0 190 aa22.65■■□□□ 1.22
TRIM28-202ENST00000341753 NXNL1Q96CM4 212 aa22.65■■□□□ 1.22
TRIM28-202ENST00000341753 ZMAT2Q96NC0 199 aaKnown RBP22.65■■□□□ 1.22
TRIM28-202ENST00000341753 MROH8Q9H579 483 aa22.65■■□□□ 1.22
TRIM28-202ENST00000341753 SBF1O95248 1867 aa22.65■■□□□ 1.22
TRIM28-202ENST00000341753 ZNF839A8K0R7 811 aa22.65■■□□□ 1.22
TRIM28-202ENST00000341753 BOLA2-SMG1P6H3BVE0 249 aa22.65■■□□□ 1.22
TRIM28-202ENST00000341753 SDHDO14521 159 aa22.65■■□□□ 1.22
TRIM28-202ENST00000341753 CABYRO75952 493 aa22.65■■□□□ 1.22
TRIM28-202ENST00000341753 DDHD2O94830 711 aa22.65■■□□□ 1.22
TRIM28-202ENST00000341753 HERC3Q15034 1050 aa22.65■■□□□ 1.22
TRIM28-202ENST00000341753 ZNF618Q5T7W0 954 aa22.65■■□□□ 1.22
TRIM28-202ENST00000341753 ZNF554Q86TJ5 538 aa22.65■■□□□ 1.22
TRIM28-202ENST00000341753 FIBCD1Q8N539 461 aa22.65■■□□□ 1.22
TRIM28-202ENST00000341753 HMGCLL1Q8TB92 370 aa22.65■■□□□ 1.22
TRIM28-202ENST00000341753 FNDC8Q8TC99 324 aa22.65■■□□□ 1.22
TRIM28-202ENST00000341753 OSBPL11Q9BXB4 747 aa22.65■■□□□ 1.22
TRIM28-202ENST00000341753 SFMBT1Q9UHJ3 866 aa22.65■■□□□ 1.22
TRIM28-202ENST00000341753 GNAO1P09471 354 aa22.64■■□□□ 1.22
TRIM28-202ENST00000341753 ETFBP38117 255 aa22.64■■□□□ 1.22
TRIM28-202ENST00000341753 SLC26A2P50443 739 aa22.64■■□□□ 1.22
TRIM28-202ENST00000341753 RABGGTBP53611 331 aa22.64■■□□□ 1.22
TRIM28-202ENST00000341753 TSTD2Q5T7W7 516 aa22.64■■□□□ 1.22
TRIM28-202ENST00000341753 ZNF280DQ6N043 979 aa22.64■■□□□ 1.22
TRIM28-202ENST00000341753 LRRC8EQ6NSJ5 796 aa22.64■■□□□ 1.22
TRIM28-202ENST00000341753 ZC3HC1Q86WB0 502 aaKnown RBP22.64■■□□□ 1.22
TRIM28-202ENST00000341753 ZDHHC17Q8IUH5 632 aa22.64■■□□□ 1.22
TRIM28-202ENST00000341753 EXOC8Q8IYI6 725 aa22.64■■□□□ 1.22
TRIM28-202ENST00000341753 SLC2A14Q8TDB8 520 aa22.64■■□□□ 1.22
TRIM28-202ENST00000341753 CYP4F12Q9HCS2 524 aa22.64■■□□□ 1.22
TRIM28-202ENST00000341753 SAC3D1A6NKF1 404 aa22.64■■□□□ 1.21
TRIM28-202ENST00000341753 EEF2KO00418 725 aaKnown RBP22.64■■□□□ 1.21
TRIM28-202ENST00000341753 HTRA2O43464 458 aaPredicted RBP22.64■■□□□ 1.21
TRIM28-202ENST00000341753 SEC24DO94855 1032 aaPredicted RBP22.64■■□□□ 1.21
TRIM28-202ENST00000341753 GABRB3P28472 473 aa22.64■■□□□ 1.21
TRIM28-202ENST00000341753 CD68P34810 354 aaPredicted RBP22.64■■□□□ 1.21
TRIM28-202ENST00000341753 MPP1Q00013 466 aa22.64■■□□□ 1.21
TRIM28-202ENST00000341753 CTBSQ01459 385 aa22.64■■□□□ 1.21
TRIM28-202ENST00000341753 BST2Q10589 180 aaKnown RBP22.64■■□□□ 1.21
TRIM28-202ENST00000341753 CTBP1Q13363 440 aa22.64■■□□□ 1.21
TRIM28-202ENST00000341753 RFTN1Q14699 578 aaPredicted RBP22.64■■□□□ 1.21
TRIM28-202ENST00000341753 AGKQ53H12 422 aa22.64■■□□□ 1.21
TRIM28-202ENST00000341753 OTUD1Q5VV17 481 aaPredicted RBP22.64■■□□□ 1.21
TRIM28-202ENST00000341753 CEP97Q8IW35 865 aa22.64■■□□□ 1.21
TRIM28-202ENST00000341753 DENND6AQ8IWF6 608 aa22.64■■□□□ 1.21
TRIM28-202ENST00000341753 STYXQ8WUJ0 223 aa22.64■■□□□ 1.21
TRIM28-202ENST00000341753 FAM49AQ9H0Q0 323 aaPredicted RBP22.64■■□□□ 1.21
TRIM28-202ENST00000341753 VTI1BQ9UEU0 232 aa22.64■■□□□ 1.21
TRIM28-202ENST00000341753 CNOT6Q9ULM6 557 aaKnown RBP22.64■■□□□ 1.21
TRIM28-202ENST00000341753 FBP2O00757 339 aa22.63■■□□□ 1.21
TRIM28-202ENST00000341753 SOCS2O14508 198 aa22.63■■□□□ 1.21
TRIM28-202ENST00000341753 TSPAN1O60635 241 aa22.63■■□□□ 1.21
TRIM28-202ENST00000341753 ADIGQ0VDE8 80 aa22.63■■□□□ 1.21
TRIM28-202ENST00000341753 CNSTQ6PJW8 725 aa22.63■■□□□ 1.21
TRIM28-202ENST00000341753 C16orf70Q9BSU1 422 aa22.63■■□□□ 1.21
TRIM28-202ENST00000341753 TNFRSF12AQ9NP84 129 aa22.63■■□□□ 1.21
TRIM28-202ENST00000341753 CASS4Q9NQ75 786 aa22.63■■□□□ 1.21
TRIM28-202ENST00000341753 MID2Q9UJV3 735 aa22.63■■□□□ 1.21
TRIM28-202ENST00000341753 CNOT11Q9UKZ1 510 aaKnown RBP22.63■■□□□ 1.21
TRIM28-202ENST00000341753 CROCCQ5TZA2 2017 aa22.63■■□□□ 1.21
TRIM28-202ENST00000341753 M0QYT0 321 aa22.63■■□□□ 1.21
TRIM28-202ENST00000341753 SUPT3HO75486 399 aa22.63■■□□□ 1.21
TRIM28-202ENST00000341753 UGT1A6P19224 532 aa22.63■■□□□ 1.21
TRIM28-202ENST00000341753 NFKB1P19838 968 aa22.63■■□□□ 1.21
TRIM28-202ENST00000341753 MATKP42679 507 aa22.63■■□□□ 1.21
TRIM28-202ENST00000341753 RHDQ02161 417 aa22.63■■□□□ 1.21
TRIM28-202ENST00000341753 ZBTB17Q13105 803 aa22.63■■□□□ 1.21
TRIM28-202ENST00000341753 DPYSQ14117 519 aa22.63■■□□□ 1.21
TRIM28-202ENST00000341753 FASTKD5Q7L8L6 764 aaKnown RBP22.63■■□□□ 1.21
TRIM28-202ENST00000341753 ALDH16A1Q8IZ83 802 aa22.63■■□□□ 1.21
TRIM28-202ENST00000341753 GPR22Q99680 433 aa22.63■■□□□ 1.21
TRIM28-202ENST00000341753 PNPLA3Q9NST1 481 aa22.63■■□□□ 1.21
TRIM28-202ENST00000341753 SETD4Q9NVD3 440 aa22.63■■□□□ 1.21
TRIM28-202ENST00000341753 DICER1Q9UPY3 1922 aaKnown RBP22.62■■□□□ 1.21
TRIM28-202ENST00000341753 SLC22A2O15244 555 aa22.62■■□□□ 1.21
TRIM28-202ENST00000341753 C8BP07358 591 aa22.62■■□□□ 1.21
TRIM28-202ENST00000341753 NDUFV1P49821 464 aa22.62■■□□□ 1.21
TRIM28-202ENST00000341753 SNX16P57768 344 aa22.62■■□□□ 1.21
TRIM28-202ENST00000341753 SYPL2Q5VXT5 272 aa22.62■■□□□ 1.21
TRIM28-202ENST00000341753 REP15Q6BDI9 236 aa22.62■■□□□ 1.21
TRIM28-202ENST00000341753 ZBTB49Q6ZSB9 765 aa22.62■■□□□ 1.21
TRIM28-202ENST00000341753 STRADAQ7RTN6 431 aa22.62■■□□□ 1.21
TRIM28-202ENST00000341753 OR9I1Q8NGQ6 314 aa22.62■■□□□ 1.21
TRIM28-202ENST00000341753 RANBP9Q96S59 729 aa22.62■■□□□ 1.21
TRIM28-202ENST00000341753 CACNA2D2Q9NY47 1150 aa22.62■■□□□ 1.21
TRIM28-202ENST00000341753 CDC14AQ9UNH5 594 aa22.62■■□□□ 1.21
TRIM28-202ENST00000341753 BRCA2P51587 3418 aa22.62■■□□□ 1.21
TRIM28-202ENST00000341753 ASB14A6NK59 587 aa22.62■■□□□ 1.21
TRIM28-202ENST00000341753 PGK1P00558 417 aa22.62■■□□□ 1.21
TRIM28-202ENST00000341753 AHSGP02765 367 aa22.62■■□□□ 1.21
TRIM28-202ENST00000341753 APOA4P06727 396 aa22.62■■□□□ 1.21
TRIM28-202ENST00000341753 PLOD1Q02809 727 aaPredicted RBP22.62■■□□□ 1.21
TRIM28-202ENST00000341753 ZNF484Q5JVG2 852 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms