RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 RGPD3A6NKT7 1758 aaPredicted RBP10.27□□□□□ -0.77
USP54-201ENST00000339859 RGPD4Q7Z3J3 1758 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 C2CD4BA6NLJ0 364 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 YJEFN3A6XGL0 299 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 FAM47E-STBD1D6RA91 191 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 E7ENQ6 273 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 CHUKO15111 745 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 INCA1Q0VD86 236 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 TXNDC8Q6A555 127 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 OR52K1Q8NGK4 314 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 BPIFA1Q9NP55 256 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 EFR3BQ9Y2G0 817 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 RAI2Q9Y5P3 530 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 ATP5HO75947 161 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 SLC35G4P0C7Q5 338 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 ELK3P41970 407 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 TAS2R40P59535 323 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 MAXP61244 160 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 ECT2LQ008S8 904 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 PAGE2BQ5JRK9 111 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 CLLU1OSQ5K130 101 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 RPAINQ86UA6 219 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 CCDC185Q8N715 623 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 CRYGNQ8WXF5 182 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 PPWD1Q96BP3 646 aaKnown RBP10.27□□□□□ -0.77
USP54-201ENST00000339859 FERD3LQ96RJ6 166 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 ELAC2Q9BQ52 826 aaKnown RBP10.27□□□□□ -0.77
USP54-201ENST00000339859 SMOC2Q9H3U7 446 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 R3HDMLQ9H3Y0 253 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 ZFYVE1Q9HBF4 777 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 ZDHHC7Q9NXF8 308 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 HMGXB4Q9UGU5 601 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 SLC25A14O95258 325 aaPredicted RBP10.27□□□□□ -0.77
USP54-201ENST00000339859 GJB5O95377 273 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 SOAT1P35610 550 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 SLC22A17Q8WUG5 538 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 MAGEB10Q96LZ2 347 aaPredicted RBP10.27□□□□□ -0.77
USP54-201ENST00000339859 GPR62Q9BZJ7 368 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 TNKS2Q9H2K2 1166 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 CCSER2Q9H7U1 834 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 FNIP2Q9P278 1114 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 COL11A2P13942 1736 aaPredicted RBP10.27□□□□□ -0.77
USP54-201ENST00000339859 TNS1Q9HBL0 1735 aaKnown RBP10.27□□□□□ -0.77
USP54-201ENST00000339859 CCNT2O60583 730 aaKnown RBP10.27□□□□□ -0.77
USP54-201ENST00000339859 SUPT7LO94864 414 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 HAUS5O94927 633 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 PFKLP17858 780 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 LRRC14Q15048 493 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 CRY1Q16526 586 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 SETD3Q86TU7 594 aaPredicted RBP10.27□□□□□ -0.77
USP54-201ENST00000339859 IRF2BP1Q8IU81 584 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 GBP7Q8N8V2 638 aaPredicted RBP10.27□□□□□ -0.77
USP54-201ENST00000339859 NTAN1Q96AB6 310 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 SLC4A5Q9BY07 1137 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 PABPC3Q9H361 631 aaKnown RBP10.27□□□□□ -0.77
USP54-201ENST00000339859 ETNK1Q9HBU6 452 aa10.27□□□□□ -0.77
USP54-201ENST00000339859 WDR6Q9NNW5 1121 aaKnown RBP10.27□□□□□ -0.77
USP54-201ENST00000339859 GRIN2DO15399 1336 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 CCDC160A6NGH7 325 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 NOL4O94818 638 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 CXCR2P25025 360 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 RAB33AQ14088 237 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 MBLAC2Q68D91 279 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 RMDN2Q96LZ7 410 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 EPB42P16452 691 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 GJA1P17302 382 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 DSG1Q02413 1049 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 CNTN1Q12860 1018 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 SLC29A2Q14542 456 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 NKAPQ8N5F7 415 aaKnown RBP10.26□□□□□ -0.77
USP54-201ENST00000339859 OR6K2Q8NGY2 324 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 FAM136AQ96C01 138 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 SHISA4Q96DD7 197 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 OSBPL1AQ9BXW6 950 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 INTS7Q9NVH2 962 aaKnown RBP10.26□□□□□ -0.77
USP54-201ENST00000339859 INSIG1O15503 277 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 PPFIA2O75334 1257 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 PEX5P50542 639 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 BLKP51451 505 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 PRKAA2P54646 552 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 CCDC153Q494R4 210 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 RBFAQ8N0V3 343 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 HMGB4Q8WW32 186 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 TOP1MTQ969P6 601 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 VPS50Q96JG6 964 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 LGMNQ99538 433 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 MYOCQ99972 504 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 ADAM33Q9BZ11 813 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 EPC1Q9H2F5 836 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 VRTNQ9H8Y1 702 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 GKN1Q9NS71 199 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 CHST7Q9NS84 486 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 NOCTQ9UK39 431 aaKnown RBP10.26□□□□□ -0.77
USP54-201ENST00000339859 FCF1Q9Y324 198 aaKnown RBP10.26□□□□□ -0.77
USP54-201ENST00000339859 USH1CQ9Y6N9 552 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 MATN3O15232 486 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 KATNA1O75449 491 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 DHPSP49366 369 aaPredicted RBP10.26□□□□□ -0.77
USP54-201ENST00000339859 IL2P60568 153 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 HSP90AA5PQ58FG0 334 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms