RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 TSEN2Q8NCE0 465 aaKnown RBP16.13■□□□□ 0.17
CCDC28A-201ENST00000332797 CCNYQ8ND76 341 aa16.13■□□□□ 0.17
CCDC28A-201ENST00000332797 ARRDC3Q96B67 414 aa16.13■□□□□ 0.17
CCDC28A-201ENST00000332797 PPP1R16AQ96I34 528 aa16.13■□□□□ 0.17
CCDC28A-201ENST00000332797 BTBD1Q9H0C5 482 aa16.13■□□□□ 0.17
CCDC28A-201ENST00000332797 NEUROG2Q9H2A3 272 aa16.13■□□□□ 0.17
CCDC28A-201ENST00000332797 DYRK4Q9NR20 520 aa16.13■□□□□ 0.17
CCDC28A-201ENST00000332797 SEPT3Q9UH03 358 aa16.13■□□□□ 0.17
CCDC28A-201ENST00000332797 FZD4Q9ULV1 537 aa16.13■□□□□ 0.17
CCDC28A-201ENST00000332797 SHROOM3Q8TF72 1996 aa16.12■□□□□ 0.17
CCDC28A-201ENST00000332797 DDX3YO15523 660 aaKnown RBP16.12■□□□□ 0.17
CCDC28A-201ENST00000332797 PEX11BO96011 259 aa16.12■□□□□ 0.17
CCDC28A-201ENST00000332797 TGM2P21980 687 aa16.12■□□□□ 0.17
CCDC28A-201ENST00000332797 CETN2P41208 172 aa16.12■□□□□ 0.17
CCDC28A-201ENST00000332797 RGRP47804 291 aa16.12■□□□□ 0.17
CCDC28A-201ENST00000332797 COPS2P61201 443 aa16.12■□□□□ 0.17
CCDC28A-201ENST00000332797 RAD51Q06609 339 aa16.12■□□□□ 0.17
CCDC28A-201ENST00000332797 ADCY2Q08462 1091 aa16.12■□□□□ 0.17
CCDC28A-201ENST00000332797 CNTN1Q12860 1018 aa16.12■□□□□ 0.17
CCDC28A-201ENST00000332797 TIGD7Q6NT04 549 aaPredicted RBP16.12■□□□□ 0.17
CCDC28A-201ENST00000332797 BBS5Q8N3I7 341 aa16.12■□□□□ 0.17
CCDC28A-201ENST00000332797 HDAC11Q96DB2 347 aa16.12■□□□□ 0.17
CCDC28A-201ENST00000332797 HES6Q96HZ4 224 aa16.12■□□□□ 0.17
CCDC28A-201ENST00000332797 LGMNQ99538 433 aa16.12■□□□□ 0.17
CCDC28A-201ENST00000332797 SGK2Q9HBY8 427 aa16.12■□□□□ 0.17
CCDC28A-201ENST00000332797 NCDNQ9UBB6 729 aa16.12■□□□□ 0.17
CCDC28A-201ENST00000332797 GMEB2Q9UKD1 530 aa16.12■□□□□ 0.17
CCDC28A-201ENST00000332797 FRYLO94915 3013 aa16.11■□□□□ 0.17
CCDC28A-201ENST00000332797 FAM47DPA6NHR8 397 aa16.11■□□□□ 0.17
CCDC28A-201ENST00000332797 MUSKO15146 869 aa16.11■□□□□ 0.17
CCDC28A-201ENST00000332797 INSIG1O15503 277 aa16.11■□□□□ 0.17
CCDC28A-201ENST00000332797 SEMA4FO95754 770 aa16.11■□□□□ 0.17
CCDC28A-201ENST00000332797 UGT2B4P06133 528 aa16.11■□□□□ 0.17
CCDC28A-201ENST00000332797 PYGMP11217 842 aa16.11■□□□□ 0.17
CCDC28A-201ENST00000332797 PECAM1P16284 738 aaPredicted RBP16.11■□□□□ 0.17
CCDC28A-201ENST00000332797 CCNCP24863 283 aa16.11■□□□□ 0.17
CCDC28A-201ENST00000332797 PTGER3P43115 390 aa16.11■□□□□ 0.17
CCDC28A-201ENST00000332797 MMP13P45452 471 aa16.11■□□□□ 0.17
CCDC28A-201ENST00000332797 RENBPP51606 427 aa16.11■□□□□ 0.17
CCDC28A-201ENST00000332797 ZNF211Q13398 564 aaPredicted RBP16.11■□□□□ 0.17
CCDC28A-201ENST00000332797 MARC1Q5VT66 337 aa16.11■□□□□ 0.17
CCDC28A-201ENST00000332797 AADACL2Q6P093 401 aa16.11■□□□□ 0.17
CCDC28A-201ENST00000332797 SRLQ86TD4 932 aa16.11■□□□□ 0.17
CCDC28A-201ENST00000332797 CCDC13Q8IYE1 715 aa16.11■□□□□ 0.17
CCDC28A-201ENST00000332797 OR14C36Q8NHC7 312 aa16.11■□□□□ 0.17
CCDC28A-201ENST00000332797 HAUS1Q96CS2 278 aa16.11■□□□□ 0.17
CCDC28A-201ENST00000332797 HSPA12BQ96MM6 686 aa16.11■□□□□ 0.17
CCDC28A-201ENST00000332797 OLFM3Q96PB7 478 aa16.11■□□□□ 0.17
CCDC28A-201ENST00000332797 TSGA13Q96PP4 275 aa16.11■□□□□ 0.17
CCDC28A-201ENST00000332797 PSKH2Q96QS6 385 aa16.11■□□□□ 0.17
CCDC28A-201ENST00000332797 HINFPQ9BQA5 517 aa16.11■□□□□ 0.17
CCDC28A-201ENST00000332797 OSBPL8Q9BZF1 889 aa16.11■□□□□ 0.17
CCDC28A-201ENST00000332797 SAE1Q9UBE0 346 aaPredicted RBP16.11■□□□□ 0.17
CCDC28A-201ENST00000332797 THADAQ6YHU6 1953 aa16.11■□□□□ 0.17
CCDC28A-201ENST00000332797 WDR87Q6ZQQ6 2873 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 PPP1R12AO14974 1030 aaPredicted RBP16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 MATN3O15232 486 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 ZSCAN12O43309 604 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 EPN2O95208 641 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 ITGB7P26010 798 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 PTPN7P35236 360 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 HSPA9P38646 679 aaKnown RBP16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 NR2C2P49116 596 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 ADPRHP54922 357 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 PPIDQ08752 370 aaKnown RBP16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 AP1B1Q10567 949 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 PDK1Q15118 436 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 SPDYCQ5MJ68 293 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 CCDC181Q5TID7 509 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 AGBL4Q5VU57 503 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 LYSMD4Q5XG99 296 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 GDPD4Q6W3E5 623 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 BBS12Q6ZW61 710 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 SLC41A1Q8IVJ1 513 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 PGBD5Q8N414 524 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 TRIM58Q8NG06 486 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 LRIG1Q96JA1 1093 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 LOXL4Q96JB6 756 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 KLHL32Q96NJ5 620 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 HERPUD2Q9BSE4 406 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 OSBPL1AQ9BXW6 950 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 C6orf106Q9H6K1 298 aaPredicted RBP16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 NT5MQ9NPB1 228 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 SPAG17Q6Q759 2223 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 USP34Q70CQ2 3546 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 LRRC72A6NJI9 287 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 MEI4A8MW99 385 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 GFRA3O60609 400 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 GJB3O75712 270 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 NEBLO76041 1014 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 PIGNO95427 931 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 RETP07949 1114 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 CSNK1DP48730 415 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 SCNN1BP51168 640 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 MAXP61244 160 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 CREB5Q02930 508 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 ZNF33AQ06730 810 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 HNRNPDQ14103 355 aaKnown RBP16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 ZNF805Q5CZA5 627 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 PIP5KL1Q5T9C9 394 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms